The Snakuscule

Abstract

Abstract-Traditional snakes, or active contours, are planar parametric curves. Their parameters are determined by optimizing the weighted sum of three energy terms: one depending on the data (typically on the integral of its gradient under the curve, or on its integral over the area enclosed by the curve), one monitoring the shape of the curve (typically promoting its smoothness, or regularizing ambiguous solutions), and one incorporating prior knowledge (typically favoring a given shape). We present in this paper a snake that we designed to be as simple as possible without losing too many of the characteristics of more complicated, fuller versions. It retains an area data term and requires regularization to avoid an ill-posed optimization problem. It is parameterized by just two points, thus further easing requirements on the optimizer. Despite its extreme simplicity, this active contour can efficiently solve a variety of problems such as cell counting and segmentation of approximately circular features.

Snakuscules

“…We have illustrated the usefulness of the snakuscule for segmenting the aorta and for cell counting. Finally, we invite the adventurous reader to visit the terrarium that we set up in [54], where petting the animals is allowed before downloading them.…”

Accurate Morphology Preserving Segmentation of Overlapping Cells based on Active Contours

“…A common approach is to fit rigid predefined shapes (i.e. templates) to the image and identify the best matches 16 17 18 19 20 . These methods can, to a certain extent, handle overlapping objects, but they are unable to capture small shape variations such as slightly elongations, which may encode essential phenotypic information.…”