The Epstein-Barr virus (EBV) origin of plasmid replication (OriP) is required for episome stability during latent infection. Telomere repeat factor 2 (TRF2) binds directly to OriP and facilitates DNA replication and plasmid maintenance. Recent studies have found that TRF2 interacts with the DNA damage checkpoint protein Chk2. We show here that Chk2 plays an important role in regulating OriP plasmid stability, chromatin modifications, and replication timing. The depletion of Chk2 by small interfering RNA (siRNA) leads to a reduction in DNA replication efficiency and a loss of OriP-dependent plasmid maintenance. This corresponds to a change in OriP replication timing and an increase in constitutive histone H3 acetylation. We show that Chk2 interacts with TRF2 in the early G 1 /S phase of the cell cycle. We also show that Chk2 can phosphorylate TRF2 in vitro at a consensus acceptor site in the amino-terminal basic domain of TRF2. TRF2 mutants with a serine-to-aspartic acid phosphomimetic substitution mutation were reduced in their ability to recruit the origin recognition complex (ORC) and stimulate OriP replication. We suggest that the Chk2 phosphorylation of TRF2 is important for coordinating ORC binding with chromatin remodeling during the early S phase and that a failure to execute these events leads to replication defects and plasmid instability.Epstein-Barr virus (EBV) is a human herpesvirus that can persist as a multicopy episome in latently infected B lymphocytes (16,30). During latent infection, the viral genomes replicate once per cell cycle and utilize the cellular machinery required for chromosomal replication (6,10,22,31,32,41,43). One virally encoded protein, EBNA1, is required for OriPdependent DNA replication and plasmid maintenance (21, 44; reviewed in references 22 and 38). EBNA1 binds to a family of repeats (FR) and a dyad symmetry element (DS) within OriP (29). The FR confers plasmid maintenance and enhances replication initiation from the DS. The DS consists of two pairs of EBNA1 binding sites flanked by telomere repeat factor (TRF) binding sites (2,9,19,42). The DS has been shown to function similarly to cellular origins that replicate once per cell cycle and assemble a prereplication complex that includes the cellular origin recognition complex (ORC) and minichromosome maintenance (MCM) subunits (6,10,31,32).ORC recruitment to the DS is thought to play a key role in determining its function as an origin of DNA replication (3,14). TRF2, along with EBNA1, was shown previously to interact with ORC subunits and to recruit the ORC to the DS (1, 23, 27, 39). The ORC interaction domains in both TRF2 and EBNA1 appear to share an amino acid composition of basic residues, often referred to as arginine-glycine-glycine (RGG) motifs (17). The basic stretches have been implicated in the intermolecular linking activity of EBNA1 and are variably termed linking region 1 (LR1) and LR2 (25). LR1 and LR2 have AT-hook DNA binding activity and confer a metaphase chromosome attachment function to EBNA1, which are t...