Studies comparing the prognostic role of RUNX1 mutations (RUNX1 mut) in acute myeloid leukemia (AML) and acute myeloid leukemia-with myelodysplasia-related changes (AML-MRC) are limited. Our study examines the genetic profile of 118 RUNX1 mut AML patients including 57 AML with RUNX1 mut and 61 AML-MRC with RUNX1 mut and 100 AML, NOS patients with wild type RUNX1 (RUNX1 wt). Results revealed that AML-MRC patients with RUNX1 mut had shorter median overall survival (OS) (11 ± 3.3 months) when compared to AML with RUNX1 mut (19 ± 7.1 months) and AML, NOS with RUNX1 wt (not reached) (p = .001). The most common concurrent mutations observed in AML-MRC with RUNX1 mut patients were DNMT3A, SRSF2, ASXL1, and IDH2 while in AML with RUNX1 mut patients were ASXL1, SRSF2, TET2, IDH2, and DNMT3A. ASXL1 and TET2 mutations appeared to adversely affect OS in AML-MRC, but not in AML with RUNX1 mut. Concurrent RUNX1/DNMT3A mutations, in contrast had negative impact on OS in AML with RUNX1 mut , but not in AML-MRC with RUNX1 mut .