Papillary thyroid carcinoma (PTC) is most common among all thyroid cancers. Multiple genomic alterations occur in PTC, and gene rearrangements are one of them. Here we screened 14 tumors for novel fusion transcripts by RNA‐Seq. Two samples harboring
RET/PTC1
and
RET/PTC3
rearrangements were positive controls whereas the remaining ones were negative regarding the common PTC alterations. We used Sanger sequencing to validate potential fusions. We detected 2 novel potentially oncogenic transcript fusions:
TG‐FGFR1
and
TRIM33‐NTRK1
. We detected 4 novel fusion transcripts of unknown significance accompanying the
TRIM33‐NTRK1
fusion:
ZSWIM5‐TP53BP2
,
TAF4B‐WDR1
,
ABI2‐MTA3
, and
ARID1B‐PSMA1
. Apart from confirming the presence of
RET/PTC1
and
RET/PTC3
in positive control samples, we also detected known oncogenic fusion transcripts in remaining samples:
TFG‐NTRK1
,
ETV6‐NTRK3
,
MKRN1‐BRAF
,
EML4‐ALK
, and novel isoform of
CCDC6‐RET
.