“…As the microhabitats for microorganisms, the aggregates are greatly changed in their physical conditions under fertilization [32]. For example, soil moisture within aggregate was directly altered by fertilizer application, which plays a key role in the survival of soil microorganisms [15,16]. The application of manure increased the microbial biomass in the form of phospholipid fatty acids (PLFA) in macro-aggregates, e.g., bacterial, fungal, and AM fungal biomass, while not significantly affecting biomass in micro-aggregates.…”