In this paper, we evaluate the performance of a data assimilation (DA) system developed to address the challenges posed by fine-scale observations from the upcoming surface water and oceanography topography (SWOT) satellite mission (Fu & Ubelmann, 2014;Morrow et al., 2019). After the satellite launches in 2022, a DA system will be used to estimate the ocean state at SWOT scales of 15 to 150 km to evaluate the new SWOT measurements . Since SWOT will resolve scales smaller than those resolved by conventional altimetry missions, it requires a novel Calibration and Validation (CalVal) phase comprising two components: (a) a geodetic part that will confirm the accuracy of the sea surface height (SSH) measurements over a range of wavelengths; and (b) an oceanographic validation, which will confirm the utility of the SSH measurements to reconstruct the ocean current field. This second component requires a ground truth of the ocean dynamics to evaluate the SWOT-based estimate. While a one-dimensional array of moorings will perform the mission validation in wavenumber space (Wang et al., 2021), data assimilation offers an effective approach to estimating the true ocean state in three dimensions through a combination of in-situ measurements and a primitive equation numerical model.