The immunogenetics of viral antigen response is associated with sub-type specific glioma risk and survival

Abstract

Background Multiple studies have implicated infections in glioma susceptibility, but the evidence remains inconsistent. Genetic variants in the human leukocyte antigen (HLA) region modulate host response to infection and have been linked to glioma risk. In this study we leveraged genetic predictors of antibody response to 10 viral antigens to investigate the relationship and glioma risk and survival. Methods Genetic reactivity scores (GRS) for each antigen were derived from genome-wide significant (p<5x10-8) variants associated with immunoglobulin G antibody response in the UK Biobank cohort. We conducted parallel analyses of glioma risk and survival for each GRS and HLA alleles imputed at two-field resolution using data from 3418 glioma patients and 8156 controls. Results Genetic reactivity scores to Epstein-Barr virus (EBV) ZEBRA and EBNA antigens and Merkel cell polyomavirus (MCV) VP1 antigen were suggestively associated with glioma risk and survival (unadjusted p<0.05). GRSZEBRA and GRSMCV were associated in opposite directions with risk of IDH wild type gliomas (Odds ratio ORZEBRA=0.91, p=0.007 / ORMCV=1.11, p=0.005). GRSEBNA was associated with both increased risk for IDH mutated gliomas (OR=1.09, p=0.04) and improved survival (Hazard ratio HR=0.86, p=0.01). HLA-DQA1*03:01 was significantly associated with decreased risk of glioma overall (OR=0.85, p=3.96x10-4) after multiple testing adjustment. Conclusion This first systematic investigation of the role of genetic determinants of viral antigen reactivity in glioma risk and survival provides insight into complex immunogenomic mechanisms of glioma pathogenesis. These results may also inform applications of antiviral based therapies in the treatment of glioma.

Genetic predisposition to altered blood cell homeostasis is associated with glioma risk and survival

“…Applying MV-LASSO to lymphocytes, neutrophils, platelets, and PLR resulted in the removal of platelets and shrunk the effect sizes of the remaining three traits (ORMV-LASSO=1. 16 for PLR; ORMV-LASSO=0.89 for lymphocytes; ORMV-LASSO=0.90 for neutrophils). Only PLR (ORMV-LASSO=1.11) and neutrophils (ORMV-LASSO=0.86) were retained for IDHmut.…”

“…We assembled data from three case-control studies with available molecular and genetic data to facilitate analyses stratified by glioma subtypes, as described in Guerra et al 16 . Briefly, we analyzed 1973 cases from the Mayo Clinic and University of California San Francisco (UCSF) Adult Glioma Study (AGS) with 1859 controls from the Glioma International Case-Control Study (GICC), an additional 659 cases and 586 controls from the UCSF AGS, and 786 glioma cases from The Cancer Genome Atlas (TCGA) with 5711 controls from the Wellcome Trust Case Control Consortium (WTCCC) 3,[25][26][27] .…”

“…However, an analysis using genetic variants associated with atopic conditions and IgE levels did not support these findings and detected only inconsistent protective effects for atopic dermatitis 15 . Other genetic association studies have uncovered protective effects of stronger immune reactivity to viral infection 16 and an inverse relationship between genetic susceptibility to glioma and autoimmune conditions 17 .…”