The frequency of PCR positive detection of exogenous DNA was determined in bovine embryos over a 21 day period of culture after microinjection. After in vitro maturation and in vitro fertilization, embryos were microinjected with one of two genomic DNA constructs. Approximately 5% of the injected embryos were prepared for PCR analysis immediately after injection (d 0). After culture for 7 d on Buffalo Rat liver (BRL) cells, embryos were assessed for stage of development. Embryos developing to the morula or blastocyst stage were randomly assigned to two groups; PCR analysis (d 7) or extended culture. Extended culture embryos were cultured for an additional 7 d. Embryos maintaining a blastocoel at d 14 were considered alive, and were assigned randomly to either further culture or PCR analysis. Of zygotes examined after d 7 of culture, 26% (189/733) of control and 12% (294/2482) of injected embryos had developed to the morula or blastocyst stage (control vs. injected; P<0.01). After 14 d of culture, 33% (10/30) of control and 51% (100/196) of injected embryos were alive (P>0.05). After 21 d of culture, 29% (2/7) of control and 14% (9/66) of injected embryos were alive (P>0.05). Analysis of d 0 injected embryos resulted in a transgene detection frequency of 100% (46/46). At d 7, detection frequency was 82% (51/62) of morulae and blastocysts, and was 84% (513/610) of dead embryos. Transgene detection frequencies decreased to 49% (18/37) and 50% (41/82) on d 14, and 38% (3/8) and 22% (5/23) on d 21 in live and dead embryos, respectively. Transgene detection frequency between live embryos on d 0, 7, and 14 was significantly different (P<0.01). DNA detection frequency in microinjected bovine embryos by PCR analysis does not give a reliable indication of live transgenic birth rates, based on reported rates, before embryo transfer must be performed.