To evaluate the effects of irrigation regimes and pumice levels on the physiological parameters of rapeseed (Brassica napus) and phenanthrene phytoremediation efficiency, a 15-week pot experiment was conducted in the open environment of the College of Agriculture at Fasa University. Three irrigation levels, 75%, 100% and 125% of the field capacity, I1, I2 and I3, respectively, and three pumice levels, 0%, 5% and 10% w/w soil, P0, P1 and P2, respectively, were considered. The results showed that the shoot fresh weight, shoot dry weight, shoot-root ratio, root fresh weight, root dry weight, root volume, root length, root surface area and root length density in the I3P2 treatment increased by 25%, 35%, 22%, 35%, 19%, 24%, 19%, 21% and 19%, respectively, compared to the corresponding control (I2P0). A significant increase in the number of soil microorganisms (32%) and removal of phenanthrene (74%) were achieved in I3P2 compared to I2P0. According to the Pearson correlation coefficient, all physiological parameters of rapeseed had a high negative correlation with the residual phenanthrene in the soil and consequently increased its dissipation. Therefore, the rapeseed plant can be used as a practical and effective species for the phytoremediation of phenanthrene-contaminated sites.