The rate of polypeptide chain elongation is up to one order of magnitude faster in prokaryotic cells than in eukaryotes. Here we report that the rates of in vitro refolding of orthologous prokaryotic and eukaryotic proteins correlate with their differential rates of biosynthesis. The mitochondrial and cytosolic aspartate aminotransferases of chicken and aspartate aminotransferase of Escherichia coli show pairwise sequence identities of 41-48% and nearly identical three-dimensional structures. Nevertheless, the prokaryotic enzyme refolded 6 times faster (at 25°C) than the eukaryotic isoenzymes after denaturation in 6 M guanidine hydrochloride. Prokaryotic malate dehydrogenase and lactate dehydrogenase also renatured faster than their orthologous eukaryotic counterparts, suggesting that evolutionary pressure has adapted the rate of folding to the rate of elongation of polypeptide chains.The rate of polypeptide chain elongation in prokaryotes (1, 2) is 4 -10 times faster than in eukaryotic cells (3,4). Here, we address the question of whether the faster rate of protein synthesis in prokaryotes correlates with faster rates of protein folding. The ultimate determinant of the folding rate of proteins is the primary structure including proline content. However, other factors such as protein size, chain topology, and thermodynamic stability are thought to contribute to a wide range of kinetic patterns (5-7). For our study, we chose three sets of homologous (or more precisely, orthologous) eukaryotic and prokaryotic proteins (Table I) to eliminate differences in size or chain topology. The AspATs 1 of chicken (mitochondrial and cytosolic isoenzymes) and of Escherichia coli possess nearly identical structures (8). All three enzyme variants are ␣ 2 dimers, each subunit composed of 13 ␣-helices, a 7-stranded -sheet core, and one molecule of the coenzyme PLP. The two other sets of orthologous proteins that we examined were prokaryotic and eukaryotic MDH and LDH. MDH is an ␣ 2 -dimer with 8 ␣-helices and 5-6 -strands/subunit, and LDH is a tetramer with 9 ␣-helices and 6 -10 -strands/subunit.
EXPERIMENTAL PROCEDURESProteins-Mitochondrial and cytosolic AspAT were purified from chicken heart as described previously (9). E. coli AspAT was overproduced in strain TY103 harboring pKDHE 19/AspAT (kindly provided by Dr. H. Kagamiyama, Osaka Medical College) and purified according to published protocols (10). Prior to experimentation, all AspATs were subjected to Sephadex G-25 gel filtration (Amersham Pharmacia Biotech) to remove excess cofactor PLP. The concentrations of the purified enzymes in the PLP form were determined photometrically (⑀ 280 ϭ 4.7ϫ10 4 M Ϫ1 cm Ϫ1 for E. coli AspAT and ⑀ 280 ϭ 7.0ϫ10 4 M Ϫ1 cm Ϫ1 for both mitochondrial and cytosolic AspATs; Ref. 9). Porcine mitochondrial, porcine cytosolic and E. coli MDH, as well as chicken muscle (type XXXIV), chicken heart (type VIII), and Bacillus stearothermophilus LDH, were purchased from Sigma.Denaturation and Refolding-Denaturation of AspAT was verified by determining th...