The current status on the taxonomy of Pseudomonas revisited: An update

Peix, Álvaro; Ramírez-Bahena, Martha-Helena; Velázquez, Encarna

doi:10.1016/j.meegid.2017.10.026

Cited by 204 publications

(252 citation statements)

References 181 publications

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“…F I G U R E 1 Maximum-likelihood tree illustrating the phylogenetic position of the Pseudomonas rpoD unique sequences (US) obtained in this study, the closest related Pseudomonas type strains and rpoD sequences from Pseudomonas strains from each Pseudomonas group according to Mulet et al (2012) and Peix et al (2018). Most of the retrieved sequences for B. xylophilus affiliated with the Pseudomonas fluorescens group (Mulet et al, 2012;Peix et al, 2018) together with all the M. galloprovincialis US. Bootstrap values of more than 500 (from 1,000 replicates) are indicated at the nodes.…”

Section: Construction and Analysis Of The Pseudomonas Rpod Clone LImentioning

confidence: 90%

“…F I G U R E 1 Maximum-likelihood tree illustrating the phylogenetic position of the Pseudomonas rpoD unique sequences (US) obtained in this study, the closest related Pseudomonas type strains and rpoD sequences from Pseudomonas strains from each Pseudomonas group according to Mulet et al (2012) and Peix et al (2018). F I G U R E 1 Maximum-likelihood tree illustrating the phylogenetic position of the Pseudomonas rpoD unique sequences (US) obtained in this study, the closest related Pseudomonas type strains and rpoD sequences from Pseudomonas strains from each Pseudomonas group according to Mulet et al (2012) and Peix et al (2018).…”

Section: Construction and Analysis Of The Pseudomonas Rpod Clone LImentioning

confidence: 99%

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Pseudomonas associated with Bursaphelenchus xylophilus, its insect vector and the host tree: A role in pine wilt disease?

et al. 2019

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In this study, we characterized the diversity of Pseudomonas associated with Bursaphelenchus xylophilus, its insect vector (Monochamus galloprovincialis) and its host (Pinus pinaster), by a culture‐independent approach using rpoD clone libraries. Clone libraries of Pseudomonas rpoD were obtained from B. xylophilus, M. galloprovincialis and infected P. pinaster. Most M. galloprovincialis and B. xylophilus sequences grouped together in the P. fluorescens group. Genes related to xenobiotics degradation and phenylacetate synthesis were present in the genomes of the type strains closely related to sequences retrieved from the nematode libraries. Results demonstrated that the nematode, during its life stages inside the tree, maintains a diverse Pseudomonas community that is closely related to the one associated with the insect vector. These bacteria might contribute to degradation of xenobiotics and tree weakening during the nematode tree infection.

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Section: Construction and Analysis Of The Pseudomonas Rpod Clone LImentioning

confidence: 90%

“…F I G U R E 1 Maximum-likelihood tree illustrating the phylogenetic position of the Pseudomonas rpoD unique sequences (US) obtained in this study, the closest related Pseudomonas type strains and rpoD sequences from Pseudomonas strains from each Pseudomonas group according to Mulet et al (2012) and Peix et al (2018). F I G U R E 1 Maximum-likelihood tree illustrating the phylogenetic position of the Pseudomonas rpoD unique sequences (US) obtained in this study, the closest related Pseudomonas type strains and rpoD sequences from Pseudomonas strains from each Pseudomonas group according to Mulet et al (2012) and Peix et al (2018).…”

Section: Construction and Analysis Of The Pseudomonas Rpod Clone LImentioning

confidence: 99%

Pseudomonas associated with Bursaphelenchus xylophilus, its insect vector and the host tree: A role in pine wilt disease?

et al. 2019

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“…Biosulfaktan merupakan senyawa sulfaktan yang dihasilkan oleh mikroorganisme yang memiliki kemampuan untuk menurunkan tegangan pada permukaan cairan yang berbeda (Banat et al, 2000). Peix et al (2018) membuktikan bahwa bakteri gram negatif Pseudomonas aeruginosa yang diisolasi dari air limbah mampu bertahan hidup dan toleran terhadap berbagai jenis kontaminan. Penelitian dalam bioremediasi di lahan pasca tambang membuktikan bahwa genus Pseudomonas efektif dalam mereduksi kontaminan logam berat.…”

Section: Hasil Dan Pembahasanunclassified

Identification of Water Bacteria from Nickel Post Mining in East Halmahera

Christita¹,

Iwanuddin

Kafiar

et al. 2018

JWAS

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ABSTRAKKegiatan pertambangan nikel menyisakan dampak pencemaran logam berat baik pada tanah maupun badan air. Salah satu metode yang banyak diaplikasikan untuk mengurangi cemaran logam berat adalah bioremediasi. Pemilihan bakteri yang berpotensi mengurangi kontaminasi logam berat di tanah sangat penting dalam proses bioremediasi. Langkah awal untuk memilih bakteri potensial adalah dengan melakukan identifikasi bakteri. Penelitian ini bertujuan untuk mengidentifikasi bakteri yang ada pada air kolam bekas galian di lahan bekas tambang nikel di Halmahera Timur. Metode yang digunakan dalam penelitian ini adalah isolasi dan identifikasi bakteri dengan metode konvensional meliputi uji morfologi, fisiologis, dan biokimia. Isolat bakteri diidentifikasi menggunakan Bergey's Manual Determinative. Hasil penelitian menunjukkan terdapat 6 genus bakteri yaitu Bacillus sp., Esherichia, Enterococcus, Pseudomona,s Staphylococcus, dan Klebsiella dengan 18 spesies bakteri pada air di lahan pasca tambang nikel. Secara morfologis didominasi oleh genus bakteri Bacillus sebesar 50 %. Hasil identifikasi bakteri ini membuktikan adanya bakteri indegenus yang resisten terhadap cekaman logam berat. Kata kunci: bakteri, tanah, air, kontaminasi, pasca tambang, Halmahera Timur ABSTRACT Nickel mining impact in heavy metal pollution on both soil and water. A method that is widely applied to reduce heavy metal contamination is bioremediation. Selection of bacteria that have potential reduction of heavy metal contamination in soil is very important in bioremediation process. The first step to select the potential bacteria is identification of samples. The purpose of this study is to identify existings bacteria in pond after

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“…Members of the genus Pseudomonas are Gram-negative bacteria that exhibit metabolic diversity and consequently are able to colonize a remarkable range of environmental conditions (1, 2). So far, Pseudomonas contains more than 190 defined species, some of which are pathogenic to plants, animals, and humans (1–3).…”

Section: Announcementmentioning

confidence: 99%

“…So far, Pseudomonas contains more than 190 defined species, some of which are pathogenic to plants, animals, and humans (1–3). …”

Section: Announcementmentioning

confidence: 99%

Draft Genome Sequence of Pseudomonas sp. LS-2, Isolated from a Diseased Gastrodia elata Plant

Zou

Zhang

et al. 2018

Microbiol Resour Announc

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The current status on the taxonomy of Pseudomonas revisited: An update

Cited by 204 publications

References 181 publications

Pseudomonas associated with Bursaphelenchus xylophilus, its insect vector and the host tree: A role in pine wilt disease?

Pseudomonas associated with Bursaphelenchus xylophilus, its insect vector and the host tree: A role in pine wilt disease?

Identification of Water Bacteria from Nickel Post Mining in East Halmahera

Draft Genome Sequence of Pseudomonas sp. LS-2, Isolated from a Diseased Gastrodia elata Plant

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