The complete mitochondrial genome sequence of the ascomycete plant pathogen
            <i>Colletotrichum acutatum</i>

Kim, Joon-Oh; Choi, Ki‐Young; Han, Jiye; Choi, Ik‐Young; Lee, Yong-Hwan; Kim, Kyoung Su

doi:10.3109/19401736.2015.1101556

Cited by 9 publications

(7 citation statements)

References 16 publications

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“…Analogically to C. salicis, only forward repeats were identified; however, this time, most of them (three to five) were localized within genes. The analysis of the previously reported C. acutatum mt genome [27] revealed the same number (five) of genomic repeats of a similar size, ranging from 31 to 112 bp, located predominantly (three) within the coding sequences. All of them were identified as forward repeats (Table S4).…”

Section: Repeated Elementsmentioning

confidence: 74%

rps3 as a Candidate Mitochondrial Gene for the Molecular Identification of Species from the Colletotrichum acutatum Species Complex

Pszczółkowska

Androsiuk

Jastrzebski

et al. 2020

Genes

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Colletotrichum species form one of the most economically significant groups of pathogenic fungi and lead to significant losses in the production of major crops—in particular, fruits, vegetables, ornamental plants, shrubs, and trees. Members of the genus Colletotrichum cause anthracnose disease in many plants. Due to their considerable variation, these fungi have been widely investigated in genetic studies as model organisms. Here, we report the complete mitochondrial genome sequences of four Colletotrichum species (C. fioriniae, C. lupini, C. salicis, and C. tamarilloi). The reported circular mitogenomes range from 30,020 (C. fioriniae) to 36,554 bp (C. lupini) in size and have identical sets of genes, including 15 protein-coding genes, two ribosomal RNA genes, and 29 tRNA genes. All four mitogenomes are characterized by a rather poor repetitive sequence content with only forward repeat representatives and a low number of microsatellites. The topology of the phylogenetic tree reflects the systematic positions of the studied species, with representatives of each Colletotrichum species complex gathered in one clade. A comparative analysis reveals consistency in the gene composition and order of Colletotrichum mitogenomes, although some highly divergent regions are also identified, like the rps3 gene which appears as a source of potential diagnostic markers for all studied Colletotrichum species.

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Section: Repeated Elementsmentioning

confidence: 74%

rps3 as a Candidate Mitochondrial Gene for the Molecular Identification of Species from the Colletotrichum acutatum Species Complex

Pszczółkowska

Androsiuk

Jastrzebski

et al. 2020

Genes

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“…Missing genomic sequences of C. acutatum are a major hindrance to understand the development and pathogenicity of this fungus. Here we present the whole genome sequence of the C. acutatum strain KC05 isolated from an infected pepper fruit in South Korea; its mitogenome was announced recently [9] .…”

Section: Experimental Design Materials and Methodsmentioning

confidence: 99%

Whole genome sequence and genome annotation of Colletotrichum acutatum , causal agent of anthracnose in pepper plants in South Korea

et al. 2016

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Colletotrichum acutatum is a destructive fungal pathogen which causes anthracnose in a wide range of crops. Here we report the whole genome sequence and annotation of C. acutatum strain KC05, isolated from an infected pepper in Kangwon, South Korea. Genomic DNA from the KC05 strain was used for the whole genome sequencing using a PacBio sequencer and the MiSeq system. The KC05 genome was determined to be 52,190,760 bp in size with a G + C content of 51.73% in 27 scaffolds and to contain 13,559 genes with an average length of 1516 bp. Gene prediction and annotation were performed by incorporating RNA-Seq data. The genome sequence of the KC05 was deposited at DDBJ/ENA/GenBank under the accession number LUXP00000000.

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“…Based on the socioeconomic impact and difficulty involved in disease management of fruit anthracnose in a wide range of crops, we previously elucidate the whole genome of C . scovillei to better understand the molecular mechanisms involved in fruit anthracnose, which have been relatively uncharacterized at the molecular level ( 8 , 31 , 32 ).…”

Section: Introductionmentioning

confidence: 99%

Homeobox Transcription Factors Are Required for Fungal Development and the Suppression of Host Defense Mechanisms in the Colletotrichum scovillei -Pepper Pathosystem

Han

Shin

et al. 2021

mBio

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The complete mitochondrial genome sequence of the ascomycete plant pathogen Colletotrichum acutatum

Cited by 9 publications

References 16 publications

rps3 as a Candidate Mitochondrial Gene for the Molecular Identification of Species from the Colletotrichum acutatum Species Complex

rps3 as a Candidate Mitochondrial Gene for the Molecular Identification of Species from the Colletotrichum acutatum Species Complex

Whole genome sequence and genome annotation of Colletotrichum acutatum , causal agent of anthracnose in pepper plants in South Korea

Homeobox Transcription Factors Are Required for Fungal Development and the Suppression of Host Defense Mechanisms in the Colletotrichum scovillei -Pepper Pathosystem

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