The complete mitochondrial genome ofMicromus angulatus(Stephens, 1836) (Neuroptera: Hemerobiidae)

Abstract

Micromus angulatus (Stephens, 1836) belonging to Microminae of Hemerobiidae was newly recorded in South Korea in 2010. We report the complete mitochondrial genome in the subfamily Microminae. The circular mitogenome of M. angulatus is 16,153 bp including 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNAs, and a single large non-coding region of 1,488 bp. The base composition was AT-biased (89.5%). Gene order of M. angulatus is identical to Neuronema laminatum (Drepanepteryginae). Phylogenetic trees present that the two Micromus mitochondrial genomes of Microminae are distinct to the two mitochondrial genomes of Drepanepteryginae of Hemerobiidae and other families of Neuroptera.

Comprehensive analysis of the complete mitochondrial genome of Melanoplus differentialis (Acrididae: Melanoplinae) captured in Korea

“…All base pairs in the final assembled mitochondrial genome sequence were confirmed with BWA v. 0.7.17 (Li 2013) and SAMtools v. 1.9 (Li et al 2009) by correcting the misassembled bases. All bioinformatic analyses were conducted in the Genome Information System environment utilized in earlier genomic studies (Han et al 2017; Hong et al 2020b; Kim et al 2021c; Park et al 2019c; Park et al 2021c; Park & Lee 2022).…”

“…All base pairs in the final assembled mitochondrial genome sequence were confirmed with BWA v. 0.7.17 (Li 2013) and SAMtools v. 1.9 (Li et al 2009) by correcting the misassembled bases. All bioinformatic analyses were conducted in the Genome Information System environment utilized in earlier genomic studies (Han et al 2017;Hong et al 2020b;Kim et al 2021c;Park et al 2019c;Park et al 2021c;Park & Lee 2022). Prime® v. 2020.2.4 (Biomatters Ltd., Auckland, New Zealand) was used to annotate the mitochondrial genome based on the previously sequenced mitochondrial genome of Melanoplus bivittatus (GenBank accession No.…”

The investigation of intraspecific characteristics and comparative analyses of the complete mitochondrial genome of Stegobium paniceum (Linnaeus, 1758) (Coleoptera: Ptinidae) assembled from public NGS raw reads of the black truffle, Tuber melanosporum

“…NGS raw reads of truffle (SRA accession: SRR5005499) were downloaded from NCBI and processed under the Genome Information System (GeIS, http://geis.infoboss.co.kr) which has been utilized in various genomics studies. 7–9,13,14,17,19,20,25–83 SRR5005499 dataset used in this study contains 29,010,538 100-bp-reads (2,901,053,800 bp). In the pipeline, de novo assembly and confirmation were done by Velvet v1.2.10…”

“…NGS raw reads of truffle (SRA accession: SRR5005499) were downloaded from NCBI and processed under the Genome Information System (GeIS, http://geis.infoboss.co.kr ) which has been utilized in various genomics studies. 7 – 9 , 13 , 14 , 17 , 19 , 20 , 25 – …”

The complete chloroplast genome of Castanopsis sieboldii (Makino) Hatus (Fagaceae)

“…The voucher was deposited in the InfoBoss Cyber Herbarium (IN; http://herbarium.infoboss.co.kr/ ; Voucher number: IB-01087; Contact: Suhyeon Park; shpark817@infoboss.co.kr ). Genome sequencing was conducted using NovaSeq6000 at Macrogen Inc., Korea, and de novo assembly and sequence confirmation were done by Velvet v1.2.10 (Zerbino and Birney 2008 ), GapCloser v1.12 (Zhao et al 2011 ), BWA v0.7.17 (Li 2013 ), and SAMtools v1.9 (Li et al 2009 ) in the Genome Information System (GeIS; http://geis.infoboss.co.kr/ ) which has been utilized in the previous organelle genomic studies (Park, Kim, Xi, Nho, et al 2019 ; Park, Park, Kim, et al 2019 ; Park, Yun, Oh, et al 2019 ; Park, Lee, et al 2021 ; Park, Min, et al 2021 ; Joo et al 2020 ; Park and Oh 2020 ; Kim et al 2021 ). Geneious Prime ® v2020.2.4 (Biomatters Ltd., Auckland, New Zealand) was used for chloroplast genome annotation based on Castanopsis fargesii chloroplast (NC_047230; Ye et al 2019 ).…”