The complete chloroplast genome of <i>Phyllostachys angusta</i> McClure (Poaceae)

Zheng, Yu; Linying, Zhao; Wang, Tao; Chen, Guofu; Hong, Yuling; Yue, Jin-Jun

doi:10.1080/23802359.2020.1860703

Cited by 3 publications

(1 citation statement)

References 9 publications

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“…The chloroplast genome of Pl. ovatoauritus was sequenced in this study, yielding a circular genome of 139,708 base pairs with a quadripartite structure similar to that of other bamboo species, such as Phyllostachys [32]. Comparative analysis of genome structure, codon usage, sequence divergence, and nucleotide polymorphism were implemented together with its Pleioblastus relatives, the results prove that only tiny differences exist among these eight species.…”

Section: Discussionmentioning

confidence: 84%

Complete Chloroplast Genome of Bamboo Species Pleioblastus ovatoauritus and Comparative Analysis of Pleioblastus from China and Japan

Peng,

Wang,

Shen

et al. 2023

Forests

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Pleioblastus ovatoauritus T.H.Wen ex W.Y.Zhang is bamboo species published in 2018, originated from and existing in southeastern China. The chloroplast genome of Pl. ovatoauritus was obtained using a high-throughput sequencing platform. The chloroplast genome is up to 139,708 bp in length and displays a typical quadripartite structure with one large single-copy region, one small single-copy region, and two inverted repeat regions. There are 82 protein-coding genes, 8 rRNA genes, and 39 tRNA genes in the plastome genome. However, the interspecific relationship of Pleioblastus species originated from China and Japan has not been revealed explicitly. To understand their relationship, data from four Chinese species and four Japanese species were selected to investigate the distinctions between their genome structures, codon usage patterns, and SSR sites. We moved forward to examine the sequence divergence and polymorphic sites between the eight species. Phylogenetic trees were then plotted using the maximum likelihood method based on different parts of the sequences. Obvious difference found in the JLB boundary and a split in the phylograms contributed to our decision to split Pleioblastus species of China and Japan into different clades. Moreover, taxonomy using the subgenera concept in Flora Reipublicae Popularis Sinicae proved untenable. Nine SSR primers for Pleioblastus genus were then developed from cp genomes, aimed at facilitating identification and germplasm investigation.

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Section: Discussionmentioning

confidence: 84%

Complete Chloroplast Genome of Bamboo Species Pleioblastus ovatoauritus and Comparative Analysis of Pleioblastus from China and Japan

Peng,

Wang,

Shen

et al. 2023

Forests

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A complete chloroplast genome of bamboo cultivar Phyllostachys edulis f. bicolor (Poaceae: Bambusoideae)

Jing

Wan

et al. 2023

Mitochondrial DNA Part B

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Phyllostachys edulis f. bicolor , a beautiful ornamental bamboo species, is a new variant of P. edulis , with yellow stems and green grooves between nodes. In this study, we assembled and annotated the complete chloroplast (cp) genome of this variety for the first time. The complete cp genome size of P. edulis f. bicolor was 139,678 bp in length and a total of 130 unique genes were annotated, including 85 protein-coding genes, 37 tRNA encoding genes, and eight rRNA encoding genes. Phylogenetic analysis results provided evidence that P. edulis f. bicolor was closely related to P. edulis ‘heterocycla’. This study contributes to better understanding of intraspecific type evolution of P. edulis .

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The complete chloroplast genome sequence of Phyllostachys incarnata Wen, 1982

Wang

Liu

Wang

et al. 2023

Mitochondrial DNA Part B

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Phyllostachys incarnata Wen, 1982 is one of the important material and edible bamboo specie of high quality in China. We reported the complete chloroplast(cp) genome of P. incarnata in this study. The cp genome of P. incarnata (GenBank accession number: OL457160) was a typical tetrad structure with a full length of 139,689 bp, comprising a pair of inverted repeated (IR) regions (21,798 bp) separated by a large single-copy (LSC) region (83,221 bp) and a small single-copy (SSC) region (12,872 bp). And the cp genome contained 136 genes, including 90 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. Phylogenetic analysis based on 19 cp genomes suggested that P. incarnata was relatively close to P. glauca among the species analyzed.

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The complete chloroplast genome of Phyllostachys angusta McClure (Poaceae)

Cited by 3 publications

References 9 publications

Complete Chloroplast Genome of Bamboo Species Pleioblastus ovatoauritus and Comparative Analysis of Pleioblastus from China and Japan

Complete Chloroplast Genome of Bamboo Species Pleioblastus ovatoauritus and Comparative Analysis of Pleioblastus from China and Japan

A complete chloroplast genome of bamboo cultivar Phyllostachys edulis f. bicolor (Poaceae: Bambusoideae)

The complete chloroplast genome sequence of Phyllostachys incarnata Wen, 1982

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