The Bryophyte Flora of Yenice Forests (Karabük, Turkey)

Uyar, Güray; Alataş, Mevlüt; Ören, Muhammet; Kecell, Tamer

doi:10.3923/ijb.2007.129.146

Cited by 15 publications

(2 citation statements)

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“…Buxbaumia viridis is found in North America [11], Europe [12,13], and Asia [14,15]. In Europe, it is known to be present in European Union (EU) countries such as Austria, Bulgaria, Croatia, Czech Republic, Denmark, Estonia, Finland, France, Germany, Greece, Hungary, Italy, Latvia, Lithuania, Poland, Romania, Slovakia, Slovenia, Spain, and Sweden [16], and it is also found in other countries such as Albania, Bosnia and Herzegovina, Montenegro, North Macedonia [17], Russia [18], Serbia [17], and the United Kingdom [7].…”

Section: Introductionmentioning

confidence: 99%

Occurrence of the Green Shield-Moss Buxbaumia viridis (Moug.) Brid. in the Bieszczady Mountains of Poland

Brewczyński¹,

Grałek²,

Bilański

2021

Forests

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The small-sized gametophytes and sporophytes of the green shield-moss Buxbaumia viridis (Moug.) Brid. make it difficult to study. However, in Europe, there has been increasing interest in this species in the past few years, mostly as a result of the implementation of the Natura 2000 network. In Poland, B. viridis has only been reported in isolated studies that have been limited in terms of area and the number of participating workers. One of the Polish regions where B. viridis was recently recorded is the Bieszczady Mountains, but there have been no large-scale surveys of that region to date. The objective of the current work was to describe the B. viridis population in the Bieszczady Mountains in terms of its spatial distribution and abundance, investigate its selected microhabitat preferences, and evaluate the conservation status of this moss species within the Natura 2000 site Bieszczady PLC180001. The studied region encompassed 93,490.44 ha, including 69,056.23 ha of managed forests and 24,434.21 ha of forests belonging to the Bieszczady National Park. A preliminary survey was conducted in the Cisna Forest District (forest area of 19,555.82 ha) on 15-17 November 2017, while the main survey was performed in selected forest subcompartments of four forest districts—Baligród, Komańcza, Lutowiska, and Stuposiany—as well as the Bieszczady National Park from 5 to 16 November 2018. The field work consisted of searching for B. viridis sporophytes and setae and recording selected population and locality characteristics. The study led to the discovery of 353 new B. viridis localities in 202 study areas, with 9197 diploid individuals (sporophytes or setae only) growing in 545 microhabitats. The number of B. viridis localities discovered in the Bieszczady Mountains during 17 days of survey in 2017 and 2018 was two times higher than the combined number of localities previously found in Poland over more than 150 years (159 localities). Additionally, the number of sporophytes and setae identified was two times greater than their overall number in previous records. In addition, this study provides information about selected microhabitat preferences and the conservation status of this moss in the Bieszczady Natura 2000 site.

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Section: Introductionmentioning

confidence: 99%

Occurrence of the Green Shield-Moss Buxbaumia viridis (Moug.) Brid. in the Bieszczady Mountains of Poland

Brewczyński¹,

Grałek²,

Bilański

2021

Forests

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“…The majority of floristic studies on bryophytes have been focused on the western, northern and southern Turkey (Özenoğlu & Gökler, 2002;Papp, 2004;Savaroğlu & Tokur, 2006;Özenoğlu Kiremit, 2007;Uyar et al, 2007;Cangül & Ezer, 2010;Düzenli et al, 2011;Batan & Özdemir, 2011). There are also quite a few published studies for the Inner Anatolia region (Can et al, 2013;Arıöz et al, 2012;Kara et al, 2013;Kara et al, 2014).…”

Section: Introductionmentioning

confidence: 99%

The Bryophyte Flora of Aladağlar National Park (Turkey)

Ezer¹,

Kara²,

Seyli³

et al. 2015

Folia Cryptog. Estonica

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It is covering an area of approximately 55.000 ha. It has many habitats and ecosystems due to ecotones intermingled between Mediterranean and Irano-Turanian. The Irano-Turanian which forms the north-western and western parts are within Niğde province and the northern parts are within Kayseri province. The Mediterranean which forms the southern and eastern parts are within Adana province (Halıcı & Aksoy, 2009). These phytogeographical regions have given Aladağlar National Park the richness of floristic diversity. It is situated in the C13 square in grid system of Turkey adopted by Henderson (1961) (Fig. 1).Unfortunately, there is no weather station in the Aladağlar National Park. The nearest stations are located in Pozantı (Adana), Yahyalı (Kayseri) and Çamardı (Niğde). According to the values from these stations, the climate type of the research area is mainly Mediterranean characterized by dry and warm summers. Average annual precipitation at Pozantı is 707.2 mm, 451.2 mm at Yahyalı, and 388.7 mm at Çamardı. Accordingly, the study area has an arid climate type in Kayseri and Niğde and semi-arid Mediterranean climate type in Adana (Akman, 1990).The main types of vegetation in Aladağlar National Park are forest, steppe and rock vegeta-

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Combinatorial Peptide Ligand Library Treatment Followed by a Dual-Enzyme, Dual-Activation Approach on a Nanoflow Liquid Chromatography/Orbitrap/Electron Transfer Dissociation System for Comprehensive Analysis of Swine Plasma Proteome

Tu¹,

Li²,

Young³

et al. 2011

Anal. Chem.

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The plasma proteome holds enormous clinical potentials, yet an in-depth analysis of the plasma proteome remains a daunting challenge due to its high complexity and the extremely-wide dynamic range in protein concentrations. Furthermore, existing antibody-based approaches for depleting high-abundance proteins are not adaptable to the analysis of animal plasma proteome, which are often essential for experimental pathology/pharmacology. Here we describe a highly-comprehensive method for the investigation of animal plasma proteomes, which employs an optimized combinatorial peptide ligand libraries (CPLL) treatment to reduce the protein concentration dynamic range and a dual-enzyme, dual-activation strategy to achieve high proteomic coverage. The CPLL-treatment enriched the lower-abundance proteins by >100-fold when loading the samples in moderately-denaturing condition with multiple loading-washing cycles. The native and the CPLL-treated plasma were digested in-parallel respectively by two enzymes (trypsin and GluC) carrying orthogonal specificities. By performing this differential proteolysis, the proteome coverage is improved where peptides produced by only one enzyme are poorly detectable. Digests were fractionated with high-resolution SCX chromatography and then resolved on a long, heated nano-LC column. MS analysis was performed on an LTQ/Orbitrap respectively with two complementary activation methods (CID and ETD). We applied this optimized strategy to investigate the plasma proteome from swine, a prominent animal model for cardiovascular diseases(CVD). This large-scale analysis results in an identification of a total 3421 unique proteins, spanning a concentration range of 9–10 orders of magnitude. The proteins were identified under a set of commonly-accepted criteria including precursor mass error<15 ppm, Xcorr cutoffs, ≥two unique peptides at the peptide probability≥95% and protein probability≥99%, and the peptide FDR of the dataset was 1.8% as estimated by searching reversed database. CPLL treatment resulted in 55% more identified proteins over these from native plasma; moreover, compared with using only trypsin and CID, the dual enzyme/activation approach enabled the identification of 2.6-fold more proteins and substantially higher sequence coverage for most individual proteins. Further analysis revealed 657 proteins as significantly associated with CVD (p<0.05), which constitute five CVD-related pathways. This study represents the first in-depth investigation of non-human plasma proteome and the strategy developed here is adaptable to the comprehensive analysis of other highly complex proteomes.

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The Bryophyte Flora of Yenice Forests (Karabük, Turkey)

Cited by 15 publications

References 10 publications

Occurrence of the Green Shield-Moss Buxbaumia viridis (Moug.) Brid. in the Bieszczady Mountains of Poland

Occurrence of the Green Shield-Moss Buxbaumia viridis (Moug.) Brid. in the Bieszczady Mountains of Poland

The Bryophyte Flora of Aladağlar National Park (Turkey)

Combinatorial Peptide Ligand Library Treatment Followed by a Dual-Enzyme, Dual-Activation Approach on a Nanoflow Liquid Chromatography/Orbitrap/Electron Transfer Dissociation System for Comprehensive Analysis of Swine Plasma Proteome

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