Despite many advances in AGN physics, observationally as well as theoretically, the relativistic matter composition of extragalactic jets remains concealed. In contrast to the so called leptonic AGN emission models, hadronic models consider relativistic protons to be present in those sources, in addition to the relativistic electrons and positrons, and possibly cold material. Here I briefly discuss most processes that are commonly believed to characterize the so-called hadronic AGN emission models, and these include leptonic as well as hadronic processes. As an application predictions for the neutrino output during the TeV-flare of 3C 279 in 2006 are provided.