The morphologically overlapping and frequently syntopic species of Spiranthes (Orchidaceae) found in the Sierra Nevada of California and Cascade Range of Oregon-S. porrifolia, S. romanzoffiana, and S. stellata-have long been a source of taxonomic confusion. Much of this confusion is attributed to hypothesized hybridization between species, and a lack of agreement concerning the distinctiveness of S. stellata from S. romanzoffiana. We used molecular phylogenetics incorporating low-copy nuclear, nuclear ribosomal, and chloroplast DNA sources, in addition to morphological data, to clarify the evolutionary relationships of this complex. Our results indicate that contrary to long-held hypotheses, hybridization between S. porrifolia and S. romanzoffiana appears to be rare or absent. Furthermore, a realignment of taxon status is necessary for S. stellata subsp. stellata and S. stellata subsp. perexilis, with subsp. perexilis elevated to full non-hybrid species rank as S. perexilis comb. & stat. nov., and subsp. stellata changed to S. ×stellata, indicating its likely recurrent allopolyploid origin between the sister species S. perexilis and S. romanzoffiana. We also describe S. ×sierrae nothosp. nov., representing rare allopolyploid hybrids between S. perexilis and S. porrifolia, and provide the first pollinator records for S. perexilis and S. ×stellata.