Synthesis, DFT, Biological and Molecular Docking Analysis of Novel Manganese(II), Iron(III), Cobalt(II), Nickel(II), and Copper(II) Chelate Complexes Ligated by 1-(4-Nitrophenylazo)-2-naphthol
Abstract:Novelmanganese(II), iron(III), cobalt(II), nickel(II), and copper(II) chelates were synthesized and studied using elemental analysis (EA), infrared spectroscopy, mass spectrometry, ultraviolet-visible spectroscopy, and conductivity, as well as magnetic measurements and thermogravimetric analysis (TG). The azo-ligand 1-[(4-nitrophenyl)diazenyl]-2-naphthol (HL) chelates to the metal ions via the nitrogen and oxygen centers of the azo group and the hydroxyl, respectively. The amounts of H2O present and its precis… Show more
“…Molecular docking research was carried out to determine the interactions and orientations of the synthesized compounds with the active site of the target protein. − Molecular operating environment (MOE) was used to conduct molecular docking on the E. coli FabH–CoA complex (PDB ID: 1HNJ) in this research. , Targeting the fatty acid synthesis receptor FabH allows researchers to assess the drugs’ efficacy against bacteria. The crystal structure of the E.…”
El-Saghier reaction is the novel, general, and green
reaction of
various amines with ethyl cyanoacetate and ethyl glycinate hydrochloride.
A new series of imidazolidin-4-ones and bis-N-(alkyl/aryl)
imidazolidin-4-ones was synthesized in a sequential, one-pot procedure
under neat conditions for 2 h at 70 °C. Excellent high yields
(90–98%) were achieved in a short period of time while avoiding
issues related to the hazardous solvents utilized (cost, safety, and
pollution). The spectrum analyses and elemental data of the newly
synthesized compounds helped us to clarify their structures. The obtained
compounds were tested for antibacterial activity in vitro
and compared to the standard antibiotic chloramphenicol as the standard,
measuring the inhibition zone (nm) and activity index (%). With an
antibacterial percentage value of 80.0 against Escherichia
coli, N,N′-(propane-1,3-diyl)
bis(2-(4-oxo-4,5-dihydro-1H-imidazole-2-yl) acetamide)
proved to be the most effective. Antimicrobial activity was confirmed
by a molecular docking investigation to investigate how chemicals
bind to the bacterial FabH–CoA complex in E. coli (PDB ID: 1HNJ).
“…Molecular docking research was carried out to determine the interactions and orientations of the synthesized compounds with the active site of the target protein. − Molecular operating environment (MOE) was used to conduct molecular docking on the E. coli FabH–CoA complex (PDB ID: 1HNJ) in this research. , Targeting the fatty acid synthesis receptor FabH allows researchers to assess the drugs’ efficacy against bacteria. The crystal structure of the E.…”
El-Saghier reaction is the novel, general, and green
reaction of
various amines with ethyl cyanoacetate and ethyl glycinate hydrochloride.
A new series of imidazolidin-4-ones and bis-N-(alkyl/aryl)
imidazolidin-4-ones was synthesized in a sequential, one-pot procedure
under neat conditions for 2 h at 70 °C. Excellent high yields
(90–98%) were achieved in a short period of time while avoiding
issues related to the hazardous solvents utilized (cost, safety, and
pollution). The spectrum analyses and elemental data of the newly
synthesized compounds helped us to clarify their structures. The obtained
compounds were tested for antibacterial activity in vitro
and compared to the standard antibiotic chloramphenicol as the standard,
measuring the inhibition zone (nm) and activity index (%). With an
antibacterial percentage value of 80.0 against Escherichia
coli, N,N′-(propane-1,3-diyl)
bis(2-(4-oxo-4,5-dihydro-1H-imidazole-2-yl) acetamide)
proved to be the most effective. Antimicrobial activity was confirmed
by a molecular docking investigation to investigate how chemicals
bind to the bacterial FabH–CoA complex in E. coli (PDB ID: 1HNJ).
“…After creating a new database, optimizing each chemical by reducing the amount of energy required for substrate preparation, and finally storing the results in the MDB format, in order to prepare the receptor, the target receptor underwent processes including the addition of hydrogen atoms, the connection of receptor types, the fixing of potential energy, and, finally, the manufacture of active pockets and dummies. , Docking patterns and interaction parameters were exported so that interaction features could be analyzed, and inhibitory activity could be ranked according to a scoring function ( S , kcal/mol). , …”
This work synthesized three new CrAz2, MnAz2, and FeAz2 complexes and investigated them using
IR,
mass, UV spectroscopy, elemental analysis, conductivity and magnetic
tests, and thermogravimetric analysis. The azo-ligand, 4-(2-hydroxyphenylAzo)-1-naphthol
(Az), couples with metal ions via its nitrogen (in
−NN– bonds) and oxygen (in hydroxyl group) atoms,
according to the IR spectra of these complexes. Through thermal examination
(TG/TGA), the number and location of water in the complexes were also
determined. Density functional theory (DFT) theory is applied to ameliorate
the structures of the ligand (Az) and metal complexes and analyze
the quantum chemical characteristics of these complexes. The antifungal
and antibacterial activity of the ligand and its complexes opposed
to several hazardous bacteria and fungi was investigated in vitro.
Metal complexes were discovered to have a higher inhibitory impact
on some organisms than the free ligand. The MnAz2 complex
exhibited the best activity among the studied materials, whereas the
CrAz2 complex had the lowest. The compounds’ binding
affinity to the E. coli (PDB ID: 1hnj)
structure was predicted using molecular docking. Binding energies
were calculated by analyzing protein-substrate interactions. These
encouraging findings imply that these chemicals may have physiological
effects and may be valuable for a variety of medical uses in the future.
“…40,41 These observations aroused our interest in the synthesis of new transition-metal compounds from mixed ligands that possess interesting biological activities. 42,43 Thus, this work aims to design and synthesize new Co(II), Ni(II), and Cu(II) mixed-ligand complexes derived from simple and easily synthesized azo-ligand, 2-(phenylthio) aniline azo (HTe), with HQ to improve and understand their action as an antimicrobial candidate and their therapeutic efficiency with the aid of DFT calculations and molecular docking studies, which considered a hot topic of research. To access this target, and to explore the effect of changing metal ion type, the new Co(II), Ni(II), and Cu(II) mixed-ligand complexes had been synthesized, characterized, and underwent in vitro and in silico molecular docking investigation of their antimicrobial activity.…”
Section: Introductionmentioning
confidence: 99%
“…In addition to these, understanding the mode of drug action and the efficiency of therapeutic agents with the aid of DFT calculations and molecular docking studies is also a hot topic of research 40,41 . These observations aroused our interest in the synthesis of new transition‐metal compounds from mixed ligands that possess interesting biological activities 42,43 …”
The main purpose of the current work is the design and synthesis of new Co(II), Ni(II), and Cu(II) mixed‐ligand complexes derived from simple and easily synthesized azo‐ligand, [2‐(phenylthio)phenyl]diazenyl}‐2‐naphthol (HTe), with 8‐hydroxyquinoline (HQ) to improve and understanding their action as an antimicrobial candidate and their therapeutic efficiency with the aid of density functional theory (DFT) calculations and molecular docking studies, which considered a hot topic of research. To access this target, and to explore the effect of changing metal ion type, the new Co(II), Ni(II), and Cu(II) mixed‐ligand complexes were firstly synthesized and characterized via elemental analysis, Fourier transform infrared (FT‐IR), mass spectrometry, ultraviolet–visible spectroscopy, magnetic susceptibility, thermogravimetric analysis (TGA), and stoichiometry analysis molar ratio method. Upon further inspection, the octahedral structures of the isolated metal complexes were found. The compounds' molecular structures were optimized using the DFT technique, and the quantum chemical parameters were evaluated. To determine whether or not these compounds are effective in preventing the spread of harmful bacteria and fungi, two of the most common environmental pollutants in the Arab world, a disc diffusion test was conducted. The prepared complexes were much more efficient against bacteria than the pristine ligands. Molecular docking experiments helped researchers learn which medicines inhibited the 1fj4 protein. All other tested compounds were found to have lower binding affinities than CuTeQ. This suggests that these compounds have the potential as starting points for the production of new classes of antibiotics. Finally, a correlation of the in vitro activity with the DFT and molecular docking data has been done and discussed.
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