We have determined the COOH-terminal and NHa-terminal amino acid sequences of the vesicular stomatitis virus (VSV) glycoprotein (G) A sequence of 122 COOH-terminal amino acids was deduced from the complete sequence of a cloned DNA insert carrying 470 nucleotides derived from the 3' end of the G mRNA. Evidence presented indicates that this portion of the poyptide includes the domains of G that reside inside the virion an span the lipid bilayer of the virion. This seems clear because a partial amino acid sequence of a fragment of G that remains associated with the membrane of the virion after exhaustive proteolytic digestions can be located unambiguously in the predicted sequence. This predicted sequence contains an uninterrupted hydrophobic domain beginning 49 amino acids and ending 30 amino acids from the COOH terminus. This region presumably spans the lipid bilayer. The COOH-terminal portion of 29 amino acids contains a high proportion of basic residues and resides inside the virion. The COOH-terminal portion of the VSV G protein therefore resembles in structure that of glycophorin, an erythrocyte membrane protein well characterized previously. Enveloped viruses, such as vesicular stomatitis virus (VSV) serve as simple and useful model systems for the study of the structure, biosynthesis, and function of membrane proteins. VSV virions contain a single glycoprotein, G, which forms spikes on the surface of the virion. This 70,000-dalton glycoprotein contains two asparagine-linked complex oligosaccharides (1, 2) and is positioned in the virion such that almost 90% of the polypeptide chain is external to the lipid bilayer (3,4). G plays two roles in the life cycle of the virus. First, it is responsible both for the binding of the virus to susceptible host cells and for inducing the uptake of the virus by the cell (5, 6). Second, during virus maturation the interaction between the internal components of the virion and the portion of G exposed on the cytoplasmic face of the plasma membrane probably directs envelopment and virus budding.The G protein is inserted into the rough endoplasmic reticulum (RER) as a nascent polypeptide chain (7,8). Both ends of the molecule appear to have critical roles. Like the majority of the secreted and membrane proteins, the nascent G polypeptide has a short hydrophobic NH2-terminal signal or leader peptide (9-12), which appears to initiate association of the nascent polypeptide-mRNA-ribosome complex with the membrane of the endoplasmic reticulum and which is removed prior to chain termination (13). Unlike secreted proteins, however, membrane proteins such as G are not discharged completely across the microsomal membrane and instead become anchored stably in the membrane. Preliminary studies have suggested that G is bound to microsomal membranes at a site very near to its COOH terminus (12,14). Hence, this region of G must differ from the COOH termini of secreted proteins in some fundamental but as yet not understood way so as to halt extrusion into the lumen of the RER.A know...