Infections in year-old Atlantic salmon, Salmo salar L., by a histozoic myxosporean parasite identified as Kudoa thyrsitis {Gilchrist, 1924) were detected at the National Marine Fisheries Service's laboratory at Manchester, on Puget Sound, Washington, U.S.A.In April 1982, 1200 Atlantic salmon smolts each weighing approximately 55 g were transferred to sea water. Initial losses were attributed to stresses of seawater entry. By September, however, mortality had risen to 0-57% per day. Fresh dead and moribund fish were anaemic with uniformly swollen kidneys. Muscle and connective tissue rapidly deteriorated in an aseptic manner after death. Attempts to isolate bacterial pathogens usually associated with diseased salmon in net-pens were unsuccessful.Mature and maturing myxosporean spores were observed in wet mount preparations of muscle tissue from fresh and fixed specimens. Samples of spleen, kidney, liver, heart and muscle tissue were fixed in buffered 10% formalin, dehydrated and embedded in paraffin wax. Sections 6 nm thick were cut from each sample and stained with Harris haematoxylin and eosin and with periodic acid-Schiff using either a haematoxylin or light green counter stain (Luna 1960).Samples for transmission electron microscopy were fixed for 2 h in 4% glutaraldehyde in 0-1 M cacodylate buffer at pH7-4, then washed three times with buffer. The tissues were post-fixed in 1% OSO4, dehydrated, and embedded in Epon 812* according to the method of Luft (1961). Thin sections were cut, then stained with lead citrate and uranyl acetate. A JEOL lOOB* transmission electron microscope was used for examination and photography.The mature spores were stellate in polar view, consisting of four shell valves and four iridescent polar capsules. The polar capsules were pyriform, often with one clearly larger than the other three. Electron microscopy revealed the sporoplasm positioned posteriorly to the polar capsules and laterally within the extracapsular space (Fig. 1). Tentative identification of the organism as K. thyrsitis was based upon spore morphology and dimensions (Kabata & Whitaker 1981); the identification was confirmed by Z. Kabata (personal communication).