Selenium (Se) is an essential trace element for animals, and exists in nature in both inorganic and organic forms. Although organic Se is more bioavailable than inorganic Se, there are inconsistent reports on the effect of organic Se on the reproductive performance of sows. This study was conducted to investigate the effect of maternal organic Se (2-hydroxy-4-methylselenobutanoic, HMSeBA) supplementation on reproductive performance and antioxidant capacity of sows, and the long-term effect on the growth performance and antioxidant capacity of their offspring with or without lipopolysaccharide (LPS) challenge. The experimental design used in this study was a CRD, forty-five Landrace × Yorkshire sows were randomly allocated to receive one of the following three diets during gestation: control diet (Control, basal diet, n = 15), Sodium selenite (Na2SeO3) supplemented diet (Na2SeO3, basal diet + 0.3 mg Se/kg Na2SeO3, n = 15), HMSeBA supplemented diet (HMSeBA, basal diet + 0.3 mg Se/kg HMSeBA, n = 15). On day 21 of age, male offspring from each group were injected with LPS or saline (n = 6). As compared to control group, maternal HMSeBA supplementation increased the number of total born piglets, while decreased birth weight (p < 0.05). In the first week of lactation, maternal HMSeBA supplementation increased litter weight gain compared with Na2SeO3 group (p < 0.05) and increased the average daily gain of piglets compared with control group and Na2SeO3 group (p < 0.05). Meanwhile, maternal HMSeBA supplementation decreased piglet birth interval as compared to control group and Na2SeO3 group (p < 0.05). Besides, plasma GSH-Px activity was higher in the HMSeBA group on farrowing 0 min and 90 min, while MDA concentration was lower on farrowing 0 min, 90 min and 135 min, than those in the control group (p < 0.05). In addition, maternal HMSeBA supplementation increased concentration of SELENOP in colostrum compared with control group (p < 0.05). Further study revealed that LPS challenged HMSeBA group had higher GSH-Px and T-AOC, and lower MDA in weaning piglets compared to the control group (p < 0.05). Taken together, maternal HMSeBA supplementation increased the number of total born piglets, shortened duration of farrowing, improved the antioxidant capacities of sows and their offspring, and improved the growth performance of sucking pigs at first week of lactation. Thus, HMSeBA supplementation during gestation has the potentiality to produce more kilogram of meat.