2003
DOI: 10.1016/s0168-9452(03)00157-2
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Sugarcane microsatellites for the assessment of genetic diversity in sugarcane germplasm

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Cited by 150 publications
(154 citation statements)
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“…Due to polyploidy we did not make any assumptions about the genetic nature of examined alleles so each SSR allele was treated as dominant (Cordeiro et al 2003). We have found 1-3 alleles amplified per plant for each SSR marker.…”
Section: Discussionmentioning
confidence: 99%
See 1 more Smart Citation
“…Due to polyploidy we did not make any assumptions about the genetic nature of examined alleles so each SSR allele was treated as dominant (Cordeiro et al 2003). We have found 1-3 alleles amplified per plant for each SSR marker.…”
Section: Discussionmentioning
confidence: 99%
“…The polymorphism information content (PIC) for each SSR marker was calculated based on the formula published by Botstein et al (1980). We used this parameter instead of the measure of heterozygosity (P het ), as P het is utilized only for co-dominant markers (Cordeiro et al 2003).…”
Section: Germplasm Characterizationmentioning
confidence: 99%
“…Due to this variability, microsatellite markers have been used for different genetic studies. Specifically for sugarcane, it is worthwhile to mention studies such as fingerprinting of Australian sugarcane clones (Piperidis et al, 2001), genotyping and fingerprinting of USA sugarcane cultivars (Pan et al, 2003a,b;Glynn et al, 2009), genetic diversity (Cordeiro et al, 2003), mapping of useful genes (Singh et al, 2005), genetic mapping , sugarcane genome study , cultivar identification (Pan et al, 2007), evolutionary relationships among species (Brown et al, 2007), use of EST-derived SSR for fingerprinting (Pinto et al, 2006), marker assisted selection (Pinto et al, 2011), etc. With the advances of sugarcane microsatellite (SSR) DNA genotyping technology, the sugarcane breeders are now able to efficiently and accurately determine the genetic identity of sugarcane varieties and reveal any sugarcane clone misidentifications (Pan et al, 2003a,b).…”
Section: Introductionmentioning
confidence: 99%
“…Genetic relationship was determined by Jaccard's similarity coefficient with the formula: Sj = A/(A+B+C), where Sj: Jaccard's similarity coefficient, A: numbers of the DNA band (allele) which belongs to both genotypes 1 and 2, B: numbers of specific band belonging to genotype 1, and C: number of specific band belonging to genotype 2 (Sneath and Sokal (1973) in Cordeiro et al, 2003). Relationship of the inbred lines correlations was determined by genetic similarity analysis.…”
Section: Analysis Of Variance Based On Molecular Datamentioning
confidence: 99%