Starch and glycogen are the most widespread glucose-based reserve polymers in plants and bacteria, respectively. Both are homopolysaccharides of α-1,4-linked glucose subunits with α-1,6-linked glucose at the branched points. Starch accumulates in the form of a quaternary structure composed of two structurally distinct polysaccharides: the highly branched amylopectin (which comprises up to ca. 80% of the starch dry weight) and the infrequently branched amylose. The synthesis of starch requires the participation of starch synthase (SS), which transfers the glucosyl moiety of the activated donor, ADP-glucose, to an elongating glucan chain. Arabidospsis possesses five distinct SS classes: granule-bound SS (GBSS), which is required for the synthesis of amylose, and SS classes I, II, III, and IV, the latter two being suggested to be absolutely required for starch granule initiation.1 Since the initial demonstration that ADP-glucose serves as the precursor molecule for both plant starch and bacterial glycogen biosynthesis, 2-4 it became widely considered that ADP-glucose pyrophosphorylase (AGP) is the sole source of ADP-glucose linked to bacterial glycogen and plant starch biosynthesis. In bacteria, genetic evidence Synthesized by glycogen synthase and starch synthases (SS) using ADP-glucose as the sugar donor molecule, glycogen and starch accumulate as predominant storage carbohydrates in most bacteria and plants, respectively. We have recently shown that the so-called "starch-less" Arabidopsis thaliana adg1-1 and aps1 mutants impaired in ADP-glucose pyrophosphorylase do indeed accumulate low starch content in normal growth conditions, and relatively high starch content when plants were cultured in the presence of microbial volatiles. Our results were strongly supported by data obtained using a highly sensitive method for confocal fluorescence microscopic visualization of iodine stained starch granules. Using Arabidopsis leaves from WT plants, aps1 plants, ss3/ss4 plants lacking both class III and class IV SS, gbss plants lacking the granule-bound SS, and sus1/sus2/sus3/sus4 plants lacking four genes that code for proteins with sucrose synthase activity, in this work we precisely describe the method for preparation of plant samples for starch microscopic examination. Furthermore, we show that this method can be used to visualize glycogen in bacteria, and pure starch granules, amylose and amylopectin.A sensitive method for confocal fluorescence microscopic visualization of starch granules in iodine stained samples Keywords: adg1-1 mutant, aps1 mutant, Arabidopsis thaliana, concofal microscopy, glycogen, iodine staining, starch, ss3/ss4 mutant, sus1/sus2/sus3/sus4 mutant Abbreviations: AGP, ADP-glucose pyrophosphorylase; GBSS, granule-bound starch synthase; GFP, green fluorescent protein; SEM, scanning electron microscopy; SS, starch synthase; SuSy, sucrose synthase; WT: wild type that glycogen biosynthesis occurs solely by the AGP pathway has been obtained from the characterization of glgC -mutants impaired in AGP such...