2014
DOI: 10.1016/j.bmcl.2014.03.066
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Structural characterization of P1′-diversified urea-based inhibitors of glutamate carboxypeptidase II

Abstract: Urea-based inhibitors of human glutamate carboxypeptidase II (GCPII) have advanced into clinical trials for imaging metastatic prostate cancer. In parallel efforts, agents with increased lipophilicity have been designed and evaluated for targeting GCPII residing within the neuraxis. Here we report the structural and computational characterization of six complexes between GCPII and P1′-diversified urea-based inhibitors that have the C-terminal glutamate replaced by more hydrophobic moieties. The X-ray structure… Show more

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Cited by 14 publications
(8 citation statements)
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References 41 publications
(51 reference statements)
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“…However, so far we were unable to produce evidence for physical interaction between HP and AMP1, mainly because of the difficulties involved in generating recombinant AMP1 in sufficient quantity and quality to perform binding studies. HP does not contain residues found in known metalloprotease inhibitors such as zinc-chelating groups resistant to hydrolysis, including hydroxamate, sulphonate phosphonate, phosphinate, phosporamidate, or urea (Zhou et al, 2005;Pavlicek et al, 2014). Based on its small size, HP might rather bind to a subdomain of the substrate-binding pocket of AMP1 similar to the N-phenylbenzamide GW9662, which inhibits the binding of fatty acid ligands to peroxisome proliferator-activated receptor gamma (Chandra et al, 2008).…”
Section: Discussionmentioning
confidence: 99%
“…However, so far we were unable to produce evidence for physical interaction between HP and AMP1, mainly because of the difficulties involved in generating recombinant AMP1 in sufficient quantity and quality to perform binding studies. HP does not contain residues found in known metalloprotease inhibitors such as zinc-chelating groups resistant to hydrolysis, including hydroxamate, sulphonate phosphonate, phosphinate, phosporamidate, or urea (Zhou et al, 2005;Pavlicek et al, 2014). Based on its small size, HP might rather bind to a subdomain of the substrate-binding pocket of AMP1 similar to the N-phenylbenzamide GW9662, which inhibits the binding of fatty acid ligands to peroxisome proliferator-activated receptor gamma (Chandra et al, 2008).…”
Section: Discussionmentioning
confidence: 99%
“…However, all such substitutions reported to date have failed to provide viable leads and instead have resulted in compounds with substantially lower PSMA affinities (9,(44)(45)(46). Likewise, a search for a new "ultimate" zinc-binding group has not been successful; consequently, ureido-based PSMA inhibitor scaffolds are currently the most prevalent theranostic PSMA-targeting vectors used, followed only by transition-state mimetics, such as phosphoramidates (47).…”
Section: Lesson 2: Need For Structure-aided Design Of Glu-ureido-basementioning
confidence: 99%
“…SQM-DH methods are now more and more often used for QM-based scoring [124,125] , QM/MM-based scoring [126,127] (sometimes unsuccessfully though still in good agreement with DFT [128] ) and the in silico design of biologically active compounds [129] . Two especially interesting studies need to be highlighted: In 2012 Stigliani et al presented a docking study based on Autodock Vina structures re-ranked with PM6-DH2/COSMO, clearly improving the results [130] .…”
Section: Applicationsmentioning
confidence: 99%