Sphingobacterium composti sp. nov., isolated from cotton-waste composts

Yoo, Seung-Hee; Weon, Hang-Yeon; Jang, HeeJin; Kim, Byung-Yong; Kwon, Soon-Wo; Go, Seung-Joo; Stackebrandt, Erko

doi:10.1099/ijs.0.64948-0

Cited by 56 publications

(43 citation statements)

References 10 publications

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“…At the time of writing, the genus comprised 12 species: Sphingobacterium spiritivorum (the type species), S. anhuiense, S. antarcticum, S. canadense, S. composti, S. daejeonense, S. faecium, S. kitahiroshimense, S. mizutaii, S. multivorum, S. siyangense and S. thalpophilum (Wei et al, 2008;Shivaji et al, 1992;Mehnaz et al, 2007;Ten et al, 2006;Kim et al, 2006;Takeuchi & Yokota, 1992;Matsuyama et al, 2008;Yabuuchi et al, 1983;Liu et al, 2008). The name Sphingobacterium composti has been proposed for two different strains Yoo et al, 2007). As the name Sphingobacterium composti Yoo et al 2007 is a later homonym of Sphingobacterium composti Ten et al 2007 (http://www.…”

Section: T )mentioning

confidence: 99%

Sphingobacterium shayense sp. nov., isolated from forest soil

Xiao

Kuang

et al. 2010

International Journal of Systematic and Evolutionary Microbiology

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A Gram-staining-negative, yellow-coloured, strictly aerobic, non-spore-forming, rod-shaped bacterium, designated HS39 T , isolated from a soil sample collected from a natural Populus euphratica forest in Xinjiang, China, was characterized using a polyphasic approach. The isolate grew optimally at 30-37 6C, at pH 6.5-8.0 and with 0-3 % NaCl. Analysis of the 16S rRNA gene sequence of strain HS39T revealed that it is a member of the genus Sphingobacterium.Sphingobacterium mizutaii ATCC 33299 T was the nearest relative (94.0 % 16S rRNA gene sequence similarity). The G+C content of the genomic DNA was 40.2 mol%. The major fatty acids were iso-C 15 : 0 , iso-C 17 : 0 3-OH and summed feature 3 (comprising C 16 : 1 v6c and/or C 16 : 1 v7c). The predominant isoprenoid quinone was MK-7. On the basis of phenotypic properties and phylogenetic inference, strain HS39 T represents a novel species of the genus Sphingobacterium, for which the name Sphingobacterium shayense sp. nov. is proposed. The type strain is HS39 T (5CCTCC AB 209006 T 5NRRL B-59203 T ).

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Section: T )mentioning

confidence: 99%

Sphingobacterium shayense sp. nov., isolated from forest soil

Xiao

Kuang

et al. 2010

International Journal of Systematic and Evolutionary Microbiology

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“…The group that had the highest occurrence in the channel catfish leech homogenate was unclassified bacteria; however, they were similar to the order Sphingobacteriales (Bacteroidetes). The order Sphingobacteriales includes several species, such as Sphingobacterium composti, S. antarcticus, and S. anhuiense, which are bacteria commonly found in forest soil, composts, and aquatic environments (Shivaji et al, 1992;Yoo et al, 2007;Wei et al, 2008). interestingly, a bacterium from Sphingobacteriales was recently isolated from diseased fish (loch & Faisal, personal communication).…”

Section: Phylummentioning

confidence: 99%

The bacterial community associated with the leechMyzobdella lugubrisLeidy 1851 (Hirudinea: Piscicolidae) from Lake Erie, Michigan, USA

Schulz

Faisal

2010

Parasite

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Summary:Leeches are widespread in the Great Lakes Basin, yet their potential to harbor disease-causing agents has not been investigated. The purpose of this study was to identify the bacterial community of the commonly occurring leech, Myzobdella lugubris, within the Lake Erie Watershed. Leech samples were collected from the pectoral fins of channel catfish, Ictalurus punctatus, and freshwater drum, Aplodinotus grunniens, from Lake Erie in commercial trap nets and pooled into two samples based on host attachment. Bacteria from within the viscera of M. lugubris were identified by sequencing their 16S rRNA (rDNA) gene of amplified community bacterial DNA extracted from pooled leech homogenate samples and were checked for similarity in two public databases: the Ribosomal Database Project and BLAST. Bacteria belonging to the phylum Bacteroidetes, β-proteobacteria, Verrucomicrobia, and unclassified Bacteria were present in the leech samples. A large number of bacteria found within leeches attached to channel catfish consisted of sequences that could not be classified beyond the Domain Bacteria. However, many of these sequences were homologous (< 45 %) to the phylum Bacteroidetes. One of the five genera detected in the leech homogenates was Flavobacterium psychrophilum, a serious fish pathogen that causes Bacterial Cold Water Disease. While the occurrence of genera varies, bacteria associated with the two fish species were similar.The bacTerial communiTy associaTed wiTh The leech Myzobdella lugubris leidy 1851 (hirudinea: Piscicolidae) from lake erie, michigan, usa

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“…Data for taxa 1 and 3-5 are from this study. All other data, and those in parentheses for taxon 4, are from Du et al (2015), Steyn et al (1998), Kim et al (2006), Yoo et al (2007), Liu et al (2008) and Mehnaz et al (2007). Fatty acids amounting to less than 1.0 % in all strains tested are not listed.…”

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confidence: 99%

“…2) phosphatidylethanolamine, phosphatidylserine, one phospholipid and four polar lipids Liu et al (2008). All other data were from Du et al (2015), Steyn et al (1998), Kim et al (2006), Yoo et al (2007), Liu et al (2008) and Mehnaz et al (2007). +, Positive; -, negative; V, results vary between reference source; ND, no data available.…”

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confidence: 99%

Sphingobacterium zeae sp. nov., an endophyte of maize

Kämpfer

Busse²,

Kleinhagauer³

et al. 2016

International Journal of Systematic and Evolutionary Microbiology

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A yellow-pigmented strain (JM-1081 T ) isolated from healthy stem tissue of Zea mays was taxonomically characterized. Cells of the strain were rod-shaped and Gram-stain-negative. Comparative 16S rRNA gene sequence analysis revealed closest relationship to the type strains of Sphingobacterium multivorum (98.1 % similarity), Sphingobacterium mucilaginosum (97.9 %) and Sphingobacterium siyangense (97.8 %). 16S rRNA gene sequence similarities to the type strains of all other Sphingobacterium species were below 97.8 %. Fatty acid analysis of whole-cell hydrolysates of the strain resulted in a pattern typical of the genus Sphingobacterium with iso-C 15 : 0 2-OH and/or C 16 : 1 !7c, iso-C 15 : 0 , iso-C 17 : 0 3-OH and C 16 : 0 and as major compounds. The polyamine pattern contained predominantly sym-homospermidine. The major quinone was menaquinone MK-7 and the only identified lipids in the polar lipid profile were phosphatidylethanolamine and phosphatidylserine. In addition, 15 unidentified lipids were detected in moderate to major amounts. Sphingolipid was detected. The diagnostic diamino acid of the peptidoglycan was meso-diaminopimelic acid. DNA-DNA hybridizations with two of the closely related type strains, those of S. multivorum and S. siyangense, as well as Sphingobacterium canadense resulted in values below 70 %. In addition to the genotypic differences, differential biochemical and chemotaxonomic properties confirmed that the isolate JM-1081 T represents a novel species, for which the name Sphingobacterium zeae sp. nov. is proposed. The type strain is JM-1081 T (=LMG 29191 T =CCM 8652 T ).

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Sphingobacterium composti sp. nov., isolated from cotton-waste composts

Cited by 56 publications

References 10 publications

Sphingobacterium shayense sp. nov., isolated from forest soil

Sphingobacterium shayense sp. nov., isolated from forest soil

The bacterial community associated with the leechMyzobdella lugubrisLeidy 1851 (Hirudinea: Piscicolidae) from Lake Erie, Michigan, USA

Sphingobacterium zeae sp. nov., an endophyte of maize

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