We
present a sensor that exploits the phenomenon
of upconversion luminescence to detect the presence of specific sequences
of small oligonucleotides such as miRNAs among others. The sensor
is based on NaYF4:Yb,Er@SiO2 nanoparticles functionalized
with ssDNA that contain azide groups on the 3′ ends. In the
presence of a target sequence, interstrand ligation is possible via
the click-reaction between one azide of the upconversion probe and
a DBCO-ssDNA-biotin probe present in the solution. As a result of
this specific and selective process, biotin is covalently attached
to the surface of the upconversion nanoparticles. The presence of
biotin on the surface of the nanoparticles allows their selective
capture on a streptavidin-coated support, giving a luminescent signal
proportional to the amount of target strands present in the test samples.
With the aim of studying the analytical properties of the sensor,
total RNA samples were extracted from healthy mosquitoes and were
spiked-in with a specific target sequence at different concentrations.
The result of these experiments revealed that the sensor was able
to detect 10–17 moles per well (100 fM) of the target
sequence in mixtures containing 100 ng of total RNA per well. A similar
limit of detection was found for spiked human serum samples, demonstrating
the suitability of the sensor for detecting specific sequences of
small oligonucleotides under real conditions. In contrast, in the
presence of noncomplementary sequences or sequences having mismatches,
the luminescent signal was negligible or conspicuously reduced.