Summary:Using in situ hybridization with an X and Y chromosome probe mixture, 106 bone marrow samples from 38 patients with malignant and non-malignant hematological diseases who received sex-mismatched allogeneic hematopoietic progenitor cell transplants (PCT) in a single institution within short-term intervals (1, 3, 6, 12, 24 and Ͼ24 months) have been sequentially studied. The patients received either HLA-identical (n = 31) or nonidentical (n = 7) PCT. Twenty-six children showed donor chimerism, 10 children showed mixed chimerism (MC) and two children presented autologous reconstitution. Chimerism status with different parameters has been related (age, sex, donor, disease status before PCT, conditioning regimen, GVHD prophylaxis, relapse, GVHD and survival). Our results indicate that female patients (P = 0.011) and a less intensive conditioning regimen (P = 0.039) are significantly associated with the MC status. Mixed chimerism is not, per se, significantly associated with leukemia relapse but an increase of the MC is indicative of clinical relapse. Keywords: FISH; mixed chimerism; minimal residual disease; conditioning regimen; relapse Allogeneic hematopoietic progenitor cell transplants (PCT) are considered to be advantageous in particular malignant hematological diseases. 1-3 The success of this treatment modality is mainly affected by relapse or graft rejection. For patients receiving unmodified marrow transplants for leukemias in early stages, relapse rates range from Ͻ10% to 40%, depending on patient selection, treatment regimen, and the length of follow-up. Patients with more advanced states of leukemia have a higher relapse rate, approaching 50% to 70%, with T cell depletion (TCD) and absence of graft-versus-host disease (GVHD) being important prognostic factors for relapse. 4 Other factors responsible for relapse and/or graft rejection may be insufficient conditioning regimens or a deficient graft-versus-leukemia (GVL)