Mammalian aminopeptidase N (APN) plays multifunctional roles in many physiological processes, including peptide metabolism, cell motility and adhesion, and coronavirus entry. Here we determined crystal structures of porcine APN at 1.85 Å resolution and its complexes with a peptide substrate and a variety of inhibitors. APN is a cell surface-anchored and seahorse-shaped zinc-aminopeptidase that forms head-to-head dimers. Captured in a catalytically active state, these structures of APN illustrate a detailed catalytic mechanism for its aminopeptidase activity. The active site and peptidebinding channel of APN reside in cavities with wide openings, allowing easy access to peptides. The cavities can potentially open up further to bind the exposed N terminus of proteins. The active site anchors the N-terminal neutral residue of peptides/proteins, and the peptide-binding channel binds the remainder of the peptides/ proteins in a sequence-independent fashion. APN also provides an exposed outer surface for coronavirus binding, without its physiological functions being affected. These structural features enable APN to function ubiquitously in peptide metabolism, interact with other proteins to mediate cell motility and adhesion, and serve as a coronavirus receptor. This study elucidates multifunctional roles of APN and can guide therapeutic efforts to treat APN-related diseases.M ammalian aminopeptidase N (APN) plays pivotal roles in many physiological processes, such as pain sensation, blood pressure regulation, tumor angiogenesis and metastasis, immune cell chemotaxis, sperm motility, cell-cell adhesion, and coronavirus entry (1). Accordingly, APN is a major target for treatment of diseases that are related to the above physiological processes. It is puzzling how APN is able to possess such a wide range of physiological functions, some of which are seemingly unrelated to its aminopeptidase activity. This study determines the atomic structures of mammalian APN and its complexes with a variety of APN-targeting ligands, providing structural basis for the multifunctional roles of APN and for the development of novel therapy strategies to treat APN-related diseases.The M1-family of metalloenzymes consists of a large number of zinc-dependent aminopeptidases containing a zinc-binding HEXXH motif. As the most extensively studied member in this family, mammalian APN (also known as CD13 or alanine aminopeptidase) is widely expressed on cell surfaces of tissues, such as intestinal epithelia and the nervous system (1). APN preferentially cleaves neutral amino acids, most notably alanine, off the N terminus of peptides. The general catalytic mechanism of M1-family metalloenzymes is believed to be similar to that of prototypic zincpeptidase thermolysin, which involves catalytic water attacking scissile peptide bonds (2), but detailed catalytic mechanisms of these enzymes remain elusive. To date, crystal structures are available for several members of the M1-family metalloenzymes (3-8). However, these enzymes are monomeric intracellu...