Longitudinal variations of phytoplankton biomass and composition were assessed in a 250 km-long section of the St.Lawrence River, which alternately runs through narrow (< 2 km) river cross sections and wide (up to 10 km) fluvial lakes . In the main river stem, concentrations of suspended matter and total phosphorus increased with distance downstream, whereas light penetration decreased . Seasonal changes in plankton composition and biomass were more important than those resulting from differences in water mass (tributary) of origin . Sampling at three cross river sections and in two fluvial lakes showed a progressive downstream decrease in phytoplankton biomass and changes in size structure and taxonomic composition. River plankton was primarily composed of small (< 10 µm equivalent spherical diameter), truly planktonic cells belonging to Cryptophyceae and diatoms, with Chlorophyceae in summer. Plankton sampled in summer among rooted macrophytes in fluvial lakes exhibited a higher biomass of resuspended periphytic algae than in the main river stem, which contributed slightly to downstream phytoplankton biomass.Successive river cross sections always shared about 50% of their taxa, indicating a rapid downstream transport of algae within the main water mass . However, the proportion of species common to all cross sections was highest during the spring freshet, and lowest during summer low discharge, likely resulting from the development of a distinct flora in fluvial lakes during summer . Conversely, about 30% of the identified taxa were exclusive to a cross section and were replaced by others occurring downstream . Overall, phytoplankton composition along the St .Lawrence River is primarily controlled by advective forces, which result in a homogeneous flora in the main river stem, with a local contribution of resuspended periphyton from fluvial lakes .