3D‐MASNet: 3D mixed‐scale asymmetric convolutional segmentation network for 6‐month‐old infant brain MR images

Abstract

Precise segmentation of infant brain magnetic resonance (MR) images into gray matter (GM), white matter (WM), and cerebrospinal fluid (CSF) are essential for studying neuroanatomical hallmarks of early brain development. However, for 6‐month‐old infants, the extremely low‐intensity contrast caused by inherent myelination hinders accurate tissue segmentation. Existing convolutional neural networks (CNNs) based segmentation models for this task generally employ single‐scale symmetric convolutions, which are inefficient for encoding the isointense tissue boundaries in baby brain images. Here, we propose a 3D mixed‐scale asymmetric convolutional segmentation network (3D‐MASNet) framework for brain MR images of 6‐month‐old infants. We replaced the traditional convolutional layer of an existing to‐be‐trained network with a 3D mixed‐scale convolution block consisting of asymmetric kernels (MixACB) during the training phase and then equivalently converted it into the original network. Five canonical CNN segmentation models were evaluated using both T1‐ and T2‐weighted images of 23 6‐month‐old infants from iSeg‐2019 datasets, which contained manual labels as ground truth. MixACB significantly enhanced the average accuracy of all five models and obtained the most considerable improvement in the fully convolutional network model (CC‐3D‐FCN) and the highest performance in the Dense U‐Net model. This approach further obtained Dice coefficient accuracies of 0.931, 0.912, and 0.961 in GM, WM, and CSF, respectively, ranking first among 30 teams on the validation dataset of the iSeg‐2019 Grand Challenge. Thus, the proposed 3D‐MASNet can improve the accuracy of existing CNNs‐based segmentation models as a plug‐and‐play solution that offers a promising technique for future infant brain MRI studies.

Functional connectome through the human life span

“…For instance, in six-month-old infants, the contrast between gray and white matter is extremely subtle, and at approximately six months of age, there is a contrast inversion in the gray and white matter. These factors greatly complicate brain tissue segmentation during this period 94, 95 . Due to the lack of a preprocessing pipeline suitable for all life-course stages, it is necessary to seek appropriate methods for datasets in early developmental stages while ensuring the uniformity of the pipelines in other datasets.…”