From the results of the present study, it was concluded that IR treatment at 70 °C for 5 min using an IR source having an intensity of 0.299 kW m can be successfully used as a method of fungal decontamination. The fungal spore population was reduced (approximately 5.3 log CFU g reductions) without significantly altering the biochemical and physical properties of grains. © 2017 Society of Chemical Industry.