Based on the Oxidative Stress Theory of Aging, long-lived organisms should exhibit greater oxidative stress tolerance than short-lived organisms. For annual plants, such as flax (Linum usitatissimum L.), there is a positive correlation between flowering time and lifespan; therefore, we investigated whether early-flowering populations of two flax cultivars (Royal [R] and Stormont Cirrus [L]) exhibited lower oxidative stress tolerance than their normal-flowering controls, in the presence and absence of exogenous oxidative stress. Oxidative stress tolerance was assessed via mitochondrial uncoupling, catalase activity, and peroxide-induced cell membrane damage. We also investigated whether early-flowering flax populations exhibited different endogenous salicylic acid (SA) levels than their normal-flowering controls since SA is known to regulate both oxidative stress response and flowering time. We found no differences except that mitochondrial uncoupling was lower in early-flowering populations from the L (but not R) cultivar compared to normal-flowering controls. Perhaps L. usitatissimum has already evolved such a low oxidative stress tolerance that it cannot be further reduced in early-flowering populations. Unexpectedly, we observed that the two cultivars exhibited different responses to exogenous oxidative stress. Catalase activity was higher in response to exogenous oxidative stress in the L (but not R) cultivar, whereas peroxide-induced cell membrane damage was higher in the R (but not L) cultivar. SA may play some role in these cultivar-specific responses. As the R and L cultivars has been selected for their seed oil and fibres, respectively, the differential response of these cultivars may reflect trade-offs between oxidative stress tolerance and trait selection.