We have established that the gene which we had previously identified as encoding the Methanococcus voltae P-type ATPase is, in fact, the structural gene for the M. voitae S-layer protein. This conclusion is based on a comparison of the N-terminal sequence of S-layer protein prepared by two independent methods with that derived from the nucleotide sequence of the cloned gene. This conclusion was further supported by immunocytochemical localization of the antigen directed against the antibodies used in the cloning experiments.High-resolution electron microscopy of thin-sectioned, freeze-etched, freeze-dried, and shadowed or negatively stained prokaryotes has shown that the outermost cell envelope in many species of bacteria and archaea consists of a crystalline cell surface layer, designated the S-layer. In most archaea the S-layer is the only cell envelope component outside the cytoplasmic membrane (1, 12). Among members of the methanogenic archaean order Methanococcales, the S-layer is composed of a regular hexagonal array of protein subunits that completely covers the cell surface (4, 5). Among the methanogens, primary sequence information is available only for the related species Methanothermus fervidus and Methanothermus sociabilis (2).Structural analysis. We have reported the nucleotide sequence of a gene that we believed was the structural gene for a membrane-associated Methanococcus voltae P-type ATPase (GenBank accession number M59200) (3). We now believe that the gene that we cloned encodes the M. voltae S-layer protein.Patel and coworkers developed a procedure for the conversion of M. voltae cells into protoplasts that led to the release of S-layer protein into the protoplasting buffer medium (8). We grew M. voltae PS (DSM 1537) in a medium containing vitamin and mineral supplements under a gas atmosphere of 20% H2 and 80% CO2 at 37°C (13). Cells were taken from the logarithmic growth phase of the culture, and the protoplasts were prepared according to the method described by Patel and coworkers (8) with the modification that 2% NaCl replaced 0.34 M NaCl in the original cell suspension. After removal of the protoplasts by centrifugation, we found that the supernatant was highly enriched in S-layer protein, which we resolved on a one-dimensional sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) gel (Fig.