Penicillin-binding proteins (PBPs) catalyze the essential reactions in the biosynthesis of cell wall peptidoglycan from glycopeptide precursors. -Lactam antibiotics normally interfere with this process by reacting covalently with the active site serine to form a stable acyl-enzyme. The design of novel -lactams active against penicillin-susceptible and penicillin-resistant organisms will require a better understanding of the molecular details of this reaction. To that end, we compared the affinities of different -lactam antibiotics to a modified soluble form of a resistant Enterococcus faecium PBP5 (⌬1-36 rPBP5). The soluble protein, ⌬1-36 rPBP5, was expressed in Escherichia coli and purified, and the NH 2 -terminal protein sequence was verified by amino acid sequencing. Using -lactams with different R1 side chains, we show that azlocillin has greater affinity for ⌬1-36 rPBP5 than piperacillin and ampicillin (apparent K i ؍ 7 ؎ 0.3 M, compared to 36 ؎ 3 and 51 ؎ 10 M, respectively). Azlocillin also exhibits the most rapid acylation rate (apparent k 2 ؍ 15 ؎ 4 M ؊1 s ؊1 ). Meropenem demonstrates an affinity for ⌬1-36 rPBP5 comparable to that of ampicillin (apparent K i ؍ 51 ؎ 15 M) but is slower at acylating (apparent k 2 ؍ 0.14 ؎ 0.02 M ؊1 s ؊1 ). This characterization defines important structure-activity relationships for this clinically relevant type II transpeptidase, shows that the rate of formation of the acyl-enzyme is an essential factor determining the efficacy of a -lactam, and suggests that the specific side chain interactions of -lactams could be modified to improve inactivation of resistant PBPs.Bacterial penicillin-binding proteins (PBPs) are members of the penicilloyl serine transferase family of enzymes (2,3,8,11). PBPs catalyze the essential reactions in the biosynthesis of cell wall peptidoglycan from the glycolipid precursor, lipid II (2). These reactions are composed of two parts: transglycosylation and transpeptidation. Transglycosylation joins the disaccharides of lipid II monomers to the peptidoglycan, creating the N-acetylmuramic acid and N-acetylglucosamine backbone of the murein sacculus. Transpeptidation cross-links the glycosidic backbone into a network of interlocking units that confers exceptional tensile strength. There are three broad types of PBPs (types I to III). Type I PBPs are multifunctional, multidomain proteins catalyzing both peptidoglycan polymerization and cross-linking. Unfortunately, penicillin resistance mediated by PBPs that are, or have become, insensitive to the inhibition by -lactams is found in many clinically important pathogens. Some of the more problematic pathogens are Staphylococcus aureus (methicillinresistant S. aureus [MRSA]), coagulase-negative staphylococci (CNS), Neisseria gonorrhoeae, Streptococcus pneumoniae, Enterococcus faecium, and Enterococcus faecalis (6). The increasing prevalence and resistance of these pathogens are overcoming our best therapeutic efforts, since few antibiotics are available to treat these penicillin-resistant o...