From the types of ring chromosomes induced in x-irradiated Chinese hamster ovary (CHO) cells, we deduce the existence of switches in the polarity of chromosomal DNA; if there is a continuous DNA double helix along the full length of the chromosome then the polarity switches imply 3'-3' and 5'-5' phosphodiester linkages. The resolution of the method is such that we estimate that there is one polarity switch for every 109 normal 3'-5' phosphodiester bonds.In a previous communication (1) we presented data that we interpreted as indicating the presence of infrequent switches in the polarity of chromosomal DNA, i.e., the equivalent of 3'-3' opposite 5'-5' linkages. This was based on the types of ring chromosomes induced by x-irradiating Chinese hamster ovary (CHO) cells in the Gi stage of the cell cycle. When broken chromosomes rejoin, the way in which the polynucleotide strands of DNA can rejoin is restricted according to the polarity (3'-5') of the strands (2, 3 sulting tetraploid metaphases (1). In addition to the paired rings and single rings formed by the orthodox rejoining of the two broken ends of a chromosome fragment with each other (Fig. 1A and C), single rings may also be formed by isolocus rejoining, i.e., reunion of complementary subunits of the DNA molecule (Fig. 1B). The essence of harlequin staining is that when two rounds of DNA replication are carried out in the presence of bromodeoxyuridine (BrdUrd), one chromatid is unifilarly substituted and stains darkly with fluorescence plus Giemsa whereas its sister chromatid is bifilarly substituted and stains lightly. In such material sister chromatid exchanges can be identified clearly as exchanges between light and dark chromatids. Thus, it is possible not only to determine whether ring chromosomes are paired or single, but also to ascertain whether sister chromatid exchange is responsible for the conformations observed.Because the centromere provides a reference point that is readily identifiable, we confine our attention to centric rings; furthermore, most rings scored were probibly derived from the three large metacentric chromosomes in the CHO complement. Consider a centric fragment in which the broken ends are in regions of like polarity and rejoin in the orthodox manner to form a ring (Fig. 1A). If no sister chromatid exchange occurs, a pair of monocentric rings will be found in the tetraploid descendent cell (Fig. la); one chromatid of each ring will be darkly stained (Fig. 2a). A sister chromatid exchange during the first post-irradiation round of DNA replication gives rise to a single dicentric ring with a twin exchange. This ring will be a symmetrical dicentric, i.e., will have centromeres that are diametrically opposite one another. The twin exchange can be recognized because there are two label switches so that one half of each chromatid is darkly stained, and the positions of the two exchanges are trans-symmetrical with respect to the centromeres (Figs. la and 2a). If the centric fragment has broken ends in regions of opposite polari...