Yeast retrotransposon Tyl transposes through an RNA intermediate by a mechanism resembling retroviral replication. Long terminal repeat retroelements require primers for initiation of reverse transcription. The primer for minus-strand DNA synthesis is the 3' end of a cellular tRNA that base pairs to the complementary region of genomic RNA (the primer binding site). The genomic RNA of retroviruses and retrotransposons is shorter than its proviral DNA counterpart, lacking complete long terminal repeats. A variety of models have been proposed to describe how complete long terminal repeats are regenerated during reverse transcription. A common feature of these models is the requirement that the 3' portion of the primer tRNA be reverse-transcribed and then utilized in a strand-transfer reaction. We introduced a silent mutation into the Tyl primer binding site and followed its fate during a single cyde of reverse transcription to directly test this aspect of the reverse transcription model. We demonstrate that the tRNA sequence is not inherited by progeny Tyl elements during reverse transcription.Tyl, a long terminal repeat (LTR)-containing retrotransposon in the yeast Saccharomyces cerevisiae, transposes through an RNA intermediate (1). In this way, the Tyl life cycle resembles that of retroviruses. Like most DNA polymerases, Tyl-encoded reverse transcriptase (RT) is primerdependent. In LTR retroelements, the synthesis of minusstrand DNA is primed by an element-specific cellular tRNA (2). The Tyl primer is the initiator tRNAMet (3).The RNA genomes of LTR retroelements contain a region complementary to the 3' end of primer tRNA called the primer binding site (PBS), located just downstream of the 5' LTR (2). The precise position of priming by tRNA is very important because it determines the 3' DNA end of the new DNA copy (Fig. 1) (2, 5). Genomic RNAs of retroviruses and LTR retrotransposons are shorter than proviral DNA, having just small terminal repeats at each end (see Fig. 1 for LTR domain nomenclature). Full-length DNA products with complete LTRs are regenerated during reverse transcription, a conserved process in LTR retroelements (2).A variety of models describe how the ends of LTR retroelements are regenerated during DNA synthesis (6, 7). According to these models, the minus-strand strong-stop DNA, the first discrete intermediate in DNA synthesis, is completed when tRNA-primed synthesis reaches the 5' end of the template RNA. The RNA portion of the resulting RNA-DNA hybrid is digested by the RT-associated RNase H. Nascent minus-strand strong-stop DNA, consisting of R-U5 sequences attached to primer tRNA (Fig. 1), is transferred and annealed to the 3' end of the genomic RNA via its complementary small terminal repeat sequence and can then be extended to the 5' end of this template. Plus-strand DNA synthesis commences from an RNase H-resistant oligoribonucleotide region at the upstream boundary ofthe 3' LTR, in PPT1. RT then proceeds toward the tRNA molecule covalentlyjoined to the minus-strand DNA templa...