Fatty acids play a pivotal role in biological processes and have many isomers, particularly at the C�C position, that influence their biological function. Distinguishing between isomers is crucial to investigating their role in health and disease. However, separating the isomers poses a significant analytical challenge. In this study, we developed a simple and rapid strategy combining ion mobility spectrometry and theoretical chemical calculations to differentiate and quantify the C�C positional isomers in 2-/3butenoic acid (BA), 2-/3-/4-pentenoic acid (PA), and 2-/3-/5hexenoic acid (HA). C�C positional isomerism was mobility-differentiated by simple complexation with crown ethers (12C4, 15C5, and 18C6) and divalent metal ions