We propose a new formulation for atomic side mode dynamics from super-radiant light scattering of trapped atoms. A detailed analysis of the recently observed super-radiant light scattering from trapped bose gases [S. Inouye et al., Science 285, 571 (1999)] is presented. We find that scattered light intensity can exhibit both oscillatory and exponential growth behaviors depending on densities, pump pulse characteristics, temperatures, and geometric shapes of trapped gas samples. The total photon scattering rate as well as the accompanied matter wave amplification depends explicitly on atom number fluctuations in the condensate. Our formulation allows for natural and transparent interpretations of subtle features in the MIT data, and provides numerical simulations in good agreement with all aspects of the experimental observations.