Livingstone, J. M., Seguin, P. and Stro¨mvik, M. V. 2010. An in silico study of the genes for the isoflavonoid pathway enzymes in soybean reveals novel expressed homologues. Can. J. Plant Sci. 90: 453Á469. Soybean [Glycine max (L.) Merr.] is an important source of isoflavones used by the nutraceutical industry. The soybean genome (2n 040, 975 Mb) has recently been sequenced, and over a million (redundant) gene tags (expressed sequence tags, ESTs) are available in public databases. Using bioinformatics, we investigated five key enzymes of the isoflavonoid pathway (i.e., chalcone isomerase, isoflavone synthase, 2-hydroxyisoflavanone dehydratase, isoflavanone-7-O-glycosyltransferase, and isoflavone-7-Oglucoside-6??-O-malonyltransferase) to gain a better understanding of which gene homologues are expressed. Contiguous sequences (contigs) were assembled from EST data to represent the specific genes and were subsequently used to predict and verify known and novel gene homologues in the recently released chromosome-based assembly of the soybean genome. Novel transcripts for 2-hydroxyisoflavanone dehydratase and isoflavone-7-O-glucosyltransferase were discovered in these data and in silico expression profiles are presented for all the genes identified in the isoflavonoid pathway.Key words: Soybean, expressed sequence tag, isoflavonoid, gene expression, homologues Livingstone, J. M., Seguin, P. et Stro¨mvik, M. V. 2010. Une e´tude in silico des ge`nes de la voie des enzymes des isoflavonoı¨des du soja re´ve`le l'expression de nouveaux homologues. Can. J. Plant Sci. 90: 453Á469. Le soja [Glycine max (L.) Merr.] est une importante source d'isoflavones pour l'industrie des nutraceutiques. On a re´cemment se´quence´le ge´nome de l'espe`ce (2n 0 40, 975 Mb) et les bases de donne´es publiques comptent plus d'un million de se´quences ge´nomiques exprime´es ou EST (redondantes). En recourant a`la bioinformatique, les auteurs ont examine´cinq enzymes cle´de la voie des isoflavonoı¨des (a`savoir, la chalcone isome´rase, l'isoflavone synthase, la 2-hydroxy-isoflavanone de´shydratase, l'isoflavanone-7-O-glycosyltransfe´rase et l'isoflavone-7-O-glucoside-6??-O-malonyltransfe´rase) dans l'espoir de mieux comprendre l'expression des homologues ge´ne´tiques. Les se´quences contigu¨es ont e´te´assemble´es a`partir des EST pour repre´senter les ge`nes spe´cifiques, puis ont servi a`pre´voir et a`ve´rifier les nouveaux homologues dans le ge´nome du soja assemble´, re´cemment rendu public. Parmi ces donne´es, on a de´couvert de nouveaux produits de transcription pour la 2-hydroxy-isoflavanone de´shydratase et l'isoflavone-7-O-glucosyltransfe´rase; les auteurs pre´sentent le profil d'expression in silico de tous les ge`nes identifie´s dans la voie des isoflavonoı¨des.
Mots clé s: Soja, EST, isoflavonoı¨des, expression des ge`nes, homologuesSoybean [Glycine max (L.) Merr.] contains several isoflavones, which have been reported to have putative beneficial health effects. Clinical trials and laboratory studies have suggested that they may have ...