Sum frequency generation (SFG) vibration spectroscopy can selectively detect crystalline cellulose without spectral interference from cell wall matrix components. Here, we show that the cellulose SFG spectrum is sensitive to cellulose microfibril alignment and packing within the cell wall. SFG intensity at 2,944 cm 21 correlated well with crystalline cellulose contents of various regions of the Arabidopsis (Arabidopsis thaliana) inflorescence, while changes in the 3,320/2,944 cm 21 intensity ratio suggest subtle changes in cellulose ordering as tissues mature. SFG analysis of two cellulose synthase mutants (irx1/cesa8 and irx3/cesa7) indicates a reduction in cellulose content without evidence of altered cellulose structure. In primary cell walls of Arabidopsis, cellulose exhibited a characteristic SFG peak at 2,920 and 3,320 cm
21, whereas in secondary cell walls, it had peaks at 2,944 and 3,320 cm
21. Starch (amylose) gave an SFG peak at 2,904 cm 21 (CH methine) whose intensity increased with light exposure prior to harvest. Selective removal of matrix polysaccharides from primary cell walls by acid hydrolysis resulted in an SFG spectrum resembling that of secondary wall cellulose. Our results show that SFG spectroscopy is sensitive to the ordering of cellulose microfibrils in plant cell walls at the meso scale (nm to mm) that is important for cell wall architecture but cannot be probed by other spectroscopic or diffraction techniques.Cellulose is a major component of lignocellulosic biomass as well as the most abundant biopolymer on Earth (Pauly and Keegstra, 2008). Chemically, cellulose is described as a linear polymer of 1→4-linked b-Dglucopyranose units. In plant cell walls, cellulose commonly exists in the form of approximately 3-nm-wide microfibrils containing numerous parallel glucan chains (variously estimated as 18-36) closely packed to form a highly ordered, or crystalline, structure (Doblin et al., 2002;Nishiyama et al., 2002;Somerville, 2006;Fernandes et al., 2011;Thomas et al., 2013). In primary cell walls, cellulose microfibrils are largely dispersed in a matrix of hemicelluloses and pectins, whereas in secondary walls, microfibrils are typically aggregated into larger bundles, approximately 10 to 20 nm in diameter, which are surrounded by hemicelluloses and lignin and highly aligned with each other (Kennedy et al., 2007;Fernandes et al., 2011). Native cellulose contains a combination of two crystalline allomorphs, I a and I b (Atalla and Vanderhart, 1984), as well as a large fraction of partially disordered chains at the surface of the microfibril and at noncrystalline segments of the microfibril that separate crystallites (Thomas et al., 2013). The structure of cellulose is important because of its fundamental role in plant mechanics, growth, and defense (Cosgrove, 2005) as well as in recalcitrance to enzymatic and chemical conversion to biofuel use (Pauly and Keegstra, 2008).Cellulose in plant cell walls is hierarchically organized, spanning length scales from 10 29 to 10 22 m. At the nanometer...