Xyloglucan is widely believed to function as a tether between cellulose microfibrils in the primary cell wall, limiting cell enlargement by restricting the ability of microfibrils to separate laterally. To test the biomechanical predictions of this “tethered network” model, we assessed the ability of cucumber (Cucumis sativus) hypocotyl walls to undergo creep (long-term, irreversible extension) in response to three family-12 endo-β-1,4-glucanases that can specifically hydrolyze xyloglucan, cellulose, or both. Xyloglucan-specific endoglucanase (XEG from Aspergillus aculeatus) failed to induce cell wall creep, whereas an endoglucanase that hydrolyzes both xyloglucan and cellulose (Cel12A from Hypocrea jecorina) induced a high creep rate. A cellulose-specific endoglucanase (CEG from Aspergillus niger) did not cause cell wall creep, either by itself or in combination with XEG. Tests with additional enzymes, including a family-5 endoglucanase, confirmed the conclusion that to cause creep, endoglucanases must cut both xyloglucan and cellulose. Similar results were obtained with measurements of elastic and plastic compliance. Both XEG and Cel12A hydrolyzed xyloglucan in intact walls, but Cel12A could hydrolyze a minor xyloglucan compartment recalcitrant to XEG digestion. Xyloglucan involvement in these enzyme responses was confirmed by experiments with Arabidopsis (Arabidopsis thaliana) hypocotyls, where Cel12A induced creep in wild-type but not in xyloglucan-deficient (xxt1/xxt2) walls. Our results are incompatible with the common depiction of xyloglucan as a load-bearing tether spanning the 20- to 40-nm spacing between cellulose microfibrils, but they do implicate a minor xyloglucan component in wall mechanics. The structurally important xyloglucan may be located in limited regions of tight contact between microfibrils.

The discovery of xyloglucan and its ability to bind tightly to cellulose has dominated our thinking about primary cell wall structure and its connection to the mechanism of cell enlargement for 40 years. Gene discovery has advanced our understanding of the synthesis of xyloglucan in the past decade, and at the same time new and unexpected results indicate that xyloglucan's role in wall structure and wall extensibility is more subtle than commonly believed. Genetic deletion of xyloglucan synthesis does not greatly disable cell wall functions. Nuclear magnetic resonance studies indicate that pectins, rather than xyloglucans, make the majority of contacts with cellulose surfaces. Xyloglucan binding may be selective for specific (hydrophobic) surfaces on the cellulose microfibril, whose structure is more complex than is commonly portrayed in cell wall cartoons. Biomechanical assessments of endoglucanase actions challenge the concept of xyloglucan tethering. The mechanically important xyloglucan is restricted to a minor component that appears to be closely intertwined with cellulose at limited sites ('biomechanical hotspots') of direct microfibril contact; these may be the selective sites of cell wall loosening by expansins. These discoveries indicate that wall extensibility is less a matter of bulk viscoelasticity of the matrix polymers and more a matter of selective control of slippage and separation of microfibrils at specific and limited sites in the wall.

Systemic lupus erythematosus (SLE) has a strong but incompletely understood genetic architecture. We conducted an association study with replication in 4,492 SLE cases and 12,675 controls from six East-Asian cohorts, to identify novel and better localize known SLE susceptibility loci. We identified 10 novel loci as well as 20 known loci with genome-wide significance. Among the novel loci, the most significant was GTF2IRD1-GTF2I at 7q11.23 (rs73366469, Pmeta=3.75×10−117, OR=2.38), followed by DEF6, IL12B, TCF7, TERT, CD226, PCNXL3, RASGRP1, SYNGR1 and SIGLEC6. We localized the most likely functional variants for each locus by analyzing epigenetic marks and gene regulation data. Ten putative variants are known to alter cis- or trans-gene expression. Enrichment analysis highlights the importance of these loci in B- and T-cell biology. Together with previously known loci, the explained heritability of SLE increases to 24%. Novel loci share functional and ontological characteristics with previously reported loci, and are possible drug targets for SLE therapeutics.

Few methods are available to regenerate articular cartilage defects in patients with osteoarthritis. We aimed to assess the safety and efficacy of articular cartilage regeneration by a novel medicinal product composed of allogeneic human umbilical cord blood‐derived mesenchymal stem cells (hUCB‐MSCs). Patients with Kellgren‐Lawrence grade 3 osteoarthritis and International Cartilage Repair Society (ICRS) grade 4 cartilage defects were enrolled in this clinical trial. The stem cell‐based medicinal product (a composite of culture‐expanded allogeneic hUCB‐MSCs and hyaluronic acid hydrogel [Cartistem]) was applied to the lesion site. Safety was assessed by the World Health Organization common toxicity criteria. The primary efficacy outcome was ICRS cartilage repair assessed by arthroscopy at 12 weeks. The secondary efficacy outcome was visual analog scale (VAS) score for pain on walking. During a 7‐year extended follow‐up, we evaluated safety, VAS score, International Knee Documentation Committee (IKDC) subjective score, magnetic resonance imaging (MRI) findings, and histological evaluations. Seven participants were enrolled. Maturing repair tissue was observed at the 12‐week arthroscopic evaluation. The VAS and IKDC scores were improved at 24 weeks. The improved clinical outcomes were stable over 7 years of follow‐up. The histological findings at 1 year showed hyaline‐like cartilage. MRI at 3 years showed persistence of the regenerated cartilage. Only five mild to moderate treatment‐emergent adverse events were observed. There were no cases of osteogenesis or tumorigenesis over 7 years. The application of this novel stem cell‐based medicinal product appears to be safe and effective for the regeneration of durable articular cartilage in osteoarthritic knees. Stem Cells Translational Medicine 2017;6:613–621

Natural Abs, which arise without known immune exposure, have been described that specifically recognize cells dying from apoptosis, but their role in innate immunity remains poorly understood. Herein, we show that the immune response to neoantigenic determinants on apoptotic thymocytes is dominated by Abs to oxidation-associated Ags, phosphorylcholine (PC), a head group that becomes exposed during programmed cell death, and malondialdehyde (MDA), a reactive aldehyde degradation product of polyunsaturated lipids produced following exposure to reactive oxidation species. While natural Abs to apoptotic cells in naive adult mice were dominated by PC and MDA specificities, the amounts of these Abs were substantially boosted by treatment of mice with apoptotic cells. Moreover, the relative amounts of PC and MDA Abs was affected by VH gene inheritance. Ab interactions with apoptotic cells also mediated the recruitment of C1q, which enhanced apoptotic cell phagocytosis by immature dendritic cells. Significantly, IgM Abs to both PC and MDA were primary factors in determining the efficiency of serum-dependent apoptotic cell phagocytosis. Hence, we demonstrate a mechanism by which certain natural Abs that recognize neoantigens on apoptotic cells, in naive mice and those induced by immune exposure to apoptotic cells, can enhance the functional capabilities of immature dendritic cells for phagocytic engulfment of apoptotic cells.

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We developed an efficient computation scheme for the phase-field simulation of grain growth, which allows unlimited number of the orientation variables and high computational efficiency independent of them. Large-scale phase-field simulations of the ideal grain growth in two-dimensions (2D) and three-dimensions (3D) were carried out with holding the coalescence-free condition, where a few tens of thousands grains evolved into a few thousand grains. By checking the validity of the von Neumann-Mullins law for individual grains, it could be shown that the present simulations were correctly carried out under the conditions of the ideal grain growth. The steady-state grain size distribution in 2D appeared as a symmetrical shape with a plateau slightly inclined to the small grain side, which was quite different from the Hillert 2D distribution. The existence of the plateau stems from the wide separation of the peaks in the size distributions of the grains with five, six, and seven sides. The steady-state grain size distribution in 3D simulation of the ideal grain growth appeared to be very close to the Hillert 3D distribution, independent of the initial average grain size and size distribution. The mean-field assumption, the Lifshitz-Slyozov stability condition, and all resulting predictions in the Hillert 3D theory were in excellent agreement with the present 3D simulation. Thus the Hillert theory can be regarded as an accurate description for the 3D ideal grain growth. The dependence of the growth rate in 3D simulations on the grain topology were discussed. The large-scale phase-field simulation confirms the 3D growth law obtained from the Surface Evolver simulations in smaller scales.

Structure determination of protein binding to noncrystalline macromolecular assemblies such as plant cell walls (CWs) poses a significant structural biology challenge. CWs are loosened during growth by expansin proteins, which weaken the noncovalent network formed by cellulose, hemicellulose, and pectins, but the CW target of expansins has remained elusive because of the minute amount of the protein required for activity and the complex nature of the CW. Using solid-state NMR spectroscopy, combined with sensitivity-enhancing dynamic nuclear polarization (DNP) and differential isotopic labeling of expansin and polysaccharides, we have now determined the functional binding target of expansin in the Arabidopsis thaliana CW. By transferring the electron polarization of a biradical dopant to the nuclei, DNP allowed selective detection of 13 C spin diffusion from trace concentrations of 13 C, 15 N-labeled expansin in the CW to nearby polysaccharides. From the spin diffusion data of wild-type and mutant expansins, we conclude that to loosen the CW, expansin binds highly specific cellulose domains enriched in xyloglucan, whereas more abundant binding to pectins is unrelated to activity. Molecular dynamics simulations indicate short 13 C-13 C distances of 4-6 Å between a hydrophobic surface of the cellulose microfibril and an aromatic motif on the expansin surface, consistent with the observed NMR signals. DNP-enhanced 2D 13 C correlation spectra further reveal that the expansin-bound cellulose has altered conformation and is enriched in xyloglucan, thus providing unique insight into the mechanism of CW loosening. DNP-enhanced NMR provides a powerful, generalizable approach for investigating protein binding to complex macromolecular targets.carbohydrate-binding module | CBM A s part of the cell growth process, plants use expansins to induce wall stress relaxation, which creates the driving force for cell water uptake and consequent enlargement (1). Expansins were first discovered in studies of acid-stimulated growth of plant cells (2). Auxin, the classical plant growth hormone, rapidly stimulates growth in part by activating plasma membrane H + -ATPases, lowering wall pH, thereby activating expansins, which have a low pH optimum. Expansins mediate wall loosening not by lysis of the major polysaccharides of the growing cell wall (CW), but by weakening the noncovalent polysaccharide network that constitutes the load-bearing structure of the CW (3).Structural studies of the mechanism of expansin-mediated wall loosening have been hampered by the fact that active plant expansins are difficult to produce in recombinant expression systems. This obstacle was recently circumvented with the discovery of microbial expansins, which are readily expressed in Escherichia coli and enabled mutagenesis studies of the residues required for wall loosening and X-ray analysis of protein-oligosaccharide structures (4-6). These studies showed that expansins consist of two domains, D1 and D2, which present a nearly flat surface for binding to ce...