“…The Altered Schaedler Flora (ASF) microbiota is one example of a defined community that offers the opportunity to study and dissect host-and-microbe relationships at a mechanistic level (Wymore et al, 2015). Moreover, it permits the addition of other specific organisms such as pathogens (Brugiroux et al, 2016, Endt et al, 2010) or pathobionts (Atherly et al, 2016, Ge et al, 2006, Rooks et al, 2017), thereby allowing for the measurement of individual member contributions to host functions such as immune system maturation (i.e., development of regulatory CD4 + T cells) and the onset of intestinal inflammation (Geuking et al, 2011, Liu et al, 2011; Wymore et al, 2015). Although the ASF community is limited in its metabolic capabilities and phylogenetic representation as compared to a conventional gut microbiota (Brugiroux et al, 2016; Dewhirst et al, 1999), the ASF community is resilient, and its members are long-term colonizers (Stehr et al, 2009) despite varying in abundance across different anatomical sites and host genotypes (Alexander et al, 2006; Sarma-Rupavtarm et al 2004).…”