Natural human tumor necrosis factor beta (TNF./~) purified from supernatants of a human B-lymphoblastoid cell line was found to t~ heterogeneous in molecular mass, with seven components resolved by gel el~trophoresis. All components are N-glyeosylated at Asa~:; N-glycosylation does not contribute to heterogeneity, In addition, part of the molecules are O-glycosylated at Thr~; O-glycosylation is heterogeneous due to variable decoration with aeuraminie acid. The four lower molecular mass forms are derived from the full-length protein by trypsin-like prot¢olytic cleavage in the N~proximal region; these dipped molecules lack O-linked carbohydrates, Two allelic variants differing in amino acid position 26 (threonin~ a~paragine) were identified,
modification. To clarify this situatio,~ and to identify the O-glycosylation site(s), we isolated natural TNF-p produced by the human B-lymphoblastoid cell line, RPMI-1788, and characterized the protein using HPLC methods, SDS-PAGE, amino acid sequence analysis and deglycosylating enzymes.
MATERIALS AND METHODS
Proch~ction and purification of natural TNF-~TNF-/ff was purified from supernatants of the human B-lymphoblastoid cell line. RPMI 1788, stimulated with mezerein by serial chromatography on controlled pore glass, Mono Q anion-exchange and concanavalin A columns, as described previously [16]. The resultin8 material was homogeneous as judged by gel l~rmeation HPLC and reverse-phase HPLC. Recombinant, E.colbderived TNF.fl wits kindly provided by G. Bodo and by Geaentech Inc., San Fr'aaciseo.
SDS-PA OE, HPLC techniques, amino aeM sequence attafysis attd peptide mappOtgProtein samples were electrophora~¢d in the presence of 0.1% SDS on 15% acrylamide gels according to Laemmli [17], Reverse-phase HPLC was performed on a Bakerbond WP C18 column (4.6 x 250 ram, particle si~ 5 pna, pore diameter 300 A) at 30°C, usin/~ the rollowin~ solvents: solvent A, 0, I% trifluoroacetie acid in water;, solvent B, 0,1% trifluoroacetie acid in acetronitrile. The follow;rig program was used: 0-2 rain, 20% B; 2-26 rain, 20-68% B (linear gradient}; 26-36 rain, 68% B (flow rate 1 ml/min). Proteins were detected by their absorption at 214 and 280 rim. Gel permeation chromatography was performed on two Waters Protein-Pak 1 125 connected in series (7.8 ~< 300 mm each, particle size 10/.tin). using 0,:5 M Na2504, 0.02 M NaH.~PO~, pH 7.0, 0,04% Tween 20 in 25% propylene glycol (flow rate 0.5 ml/min). Proteins were detected by their absorption at 214 rim.For N-terminal amino acid sequencing, proteins v,,er~ dissolved in 70% formic acid and directly applied to the cartridge of an Applied Biosystems mod=i 477A puled dqui~-phas~ sequencer .... e s.que ....