At least four mRNAs for oat phytochrome A~phyA! are present in etiolated oat tissue. The complete amino acid sequences of two phyA isoforms~A3 and A4! and the N-terminal amino acid sequence of a third isoform~A5! were deduced from cDNA sequencing~Hershey et al., 1985!. In the present study, heterogeneity of phyA on a protein level was studied by tryptic mapping using electrospray ionization mass-spectrometry~ESIMS!. The total tryptic digest of iodoacetamide-modified phyA was fractionated by gel filtration chromatography followed by reversed-phase highperformance liquid chromatography. ESIMS was used to identify peptides. Amino acid sequences of the peptides were confirmed or determined by collision-induced dissociation mass spectrometry~CID MS!, MS0MS, or by subdigestion of the tryptic peptides followed by ESIMS analysis. More than 97% of the phyA3 sequence~1,128 amino acid residues! was determined in the present study. Mass-spectrometric analysis of peptides unique to each form showed that phyA purified from etiolated oat seedling is represented by three isoforms A5, A3, and A4, with ratio 3.4:2.3:1.0. Possible light-induced changes in phytochrome in vivo phosphorylation site at Ser7~Lapko VN et al., 1997, Biochemistry 36:10595-10599! as well at Ser17 and Ser598~known as in vitro phosphorylation sites! were also analyzed. The extent of phosphorylation at Ser7 appears to be the same for phyA isolated from dark-grown and red-light illuminated seedlings. In addition to Ser7, Ser598 was identified as an in vivo phosphorylation site in oat phyA. Ser598 phosphorylation was found only in phyA from the red light-treated seedlings, suggesting that the protein phosphorylation plays a functional role in the phytochrome A-mediated light-signal transduction.