Abstract. The Tibetan Plateau (TP) has the largest areas of permafrost terrain in the mid-and low-latitude regions of the world. Some permafrost distribution maps have been compiled but, due to limited data sources, ambiguous criteria, inadequate validation, and deficiency of high-quality spatial data sets, there is high uncertainty in the mapping of the permafrost distribution on the TP. We generated a new permafrost map based on freezing and thawing indices from modified Moderate Resolution Imaging Spectroradiometer (MODIS) land surface temperatures (LSTs) and validated this map using various ground-based data sets. The soil thermal properties of five soil types across the TP were estimated according to an empirical equation and soil properties (moisture content and bulk density). The temperature at the top of permafrost (TTOP) model was applied to simulate the permafrost distribution. Permafrost, seasonally frozen ground, and unfrozen ground covered areas of 1.06 × 10 6 km 2 (0.97-1.15 × 10 6 km 2 , 90 % confidence interval) (40 %), 1.46 × 10 6 (56 %), and 0.03 × 10 6 km 2 (1 %), respectively, excluding glaciers and lakes. Ground-based observations of the permafrost distribution across the five investigated regions (IRs, located in the transition zones of the permafrost and seasonally frozen ground) and three highway transects (across the entire permafrost regions from north to south) were used to validate the model. Validation results showed that the kappa coefficient varied from 0.38 to 0.78 with a mean of 0.57 for the five IRs and 0.62 to 0.74 with a mean of 0.68 within the three transects. Compared with earlier studies, the TTOP modelling results show greater accuracy. The results provide more detailed information on the permafrost distribution and basic data for use in future research on the Tibetan Plateau permafrost.

Cytokines are deregulated in cancers and can contribute to tumor growth. In patients with diffuse large-cell lymphoma (DLBCL), we observed higher levels of JAK/STAT pathway-related serum cytokines (ie, IL-6, IL-10, epidermal growth factor, and IL-2) compared with controls. Of these, only IL-10 activated the JAK2 pathway in lymphoma cells in vitro. Patients with high serum IL-10 had shorter event-free survival (EFS) than patients with low levels (P > .01) and high IL-10 was correlated with high lactase dehydrogenase (P = .0085) and higher International Prognostic Index scores (P = .01). To explore the mechanism by which IL-10 may contribute to an inferior EFS, we investigated the effect of IL-10 on the JAK2 pathway and found that the IL-10/IL-10 receptor complex up-regulated JAK2 signaling. Neutralizing Ab to IL-10 inhibited constitutive and IL-10-induced JAK2/STAT3 phosphorylation. JAK2 inhibition dephosphorylated JAK2 and STAT3 and caused an inhibitory effect on phospho-JAK2-positive DLBCL cells; there was a minimal effect on phospho-JAK2-negative cells. Apoptosis induced by JAK2 inhibition was dependent on inhibition of autocrine IL-10 and c-myc expression and independent of Bcl-2 family expression. These results provide the rationale for testing JAK2 inhibitors in DLBCL patients, and indicate that serum IL-10 may be a biomarker to identify patients more likely to respond to JAK2-targeted therapy.

Permafrost on the Qinghai–Tibet Plateau (QTP) has undergone degradation as a result of recent climate change. This may alter the thermo‐hydrological processes and unlock soil organic carbon, and thereby affect local hydrological, ecological, and climatic systems. The relationships between permafrost and climate change have received extensive attention, and in this paper we review climate change for permafrost regions of the QTP over the past 30 years. We summarize the current state and changes in permafrost distribution and thickness, ground temperature, and ground ice conditions. We focus on changes in permafrost thermal state and in active‐layer thickness (ALT). Possible future changes in ground temperature and ALT are also discussed. Finally, we discuss the changes in hydrological processes and to ecosystems caused by permafrost degradation. Air temperature and ground temperature in the permafrost regions of the QTP have increased from 1980 to 2018, and the active layer has been thickening at a rate of 19.5 cm per decade. The response of permafrost to climate change is not as fast as in some reports, and permafrost degradation is slower than projected by models that do not account for conditions deep in permafrost.

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Stomata are essential for efficient gas and water-vapor exchange between the atmosphere and plants. Stomatal density and movement are controlled by a series of signal molecules including phytohormones and peptides as well as by environmental stimuli. It is known that heterotrimeric G-proteins play an important role in the ABA-inhibited stomatal opening. In this study, the G-protein signaling pathway was also found to regulate stomatal density on the lower epidermis of Arabidopsis cotyledons. The loss-of-function mutation of the G-protein alpha-subunit (GPA1) showed a reduction in stomatal density, while overexpression of the constitutively active form of GPA1(QL) increased stomatal density, indicating a positive role of the active form of GPA1 in stomatal development. In contrast, stomatal density increased in the null mutant of the G-protein beta-subunit (AGB1) but decreased in transgenic lines that overexpressed AGB1. Stomatal analysis of the gpa1 agb1 double mutants displayed an average value of stomatal density compared to the single mutants. Taken together, these results suggest that the stomatal density in Arabidopsis is modulated by GPA1 and AGB1 in an antagonistic manner.

The Asian arowana (Scleropages formosus), one of the world’s most expensive cultivated ornamental fishes, is an endangered species. It represents an ancient lineage of teleosts: the Osteoglossomorpha. Here, we provide a high-quality chromosome-level reference genome of a female golden-variety arowana using a combination of deep shotgun sequencing and high-resolution linkage mapping. In addition, we have also generated two draft genome assemblies for the red and green varieties. Phylogenomic analysis supports a sister group relationship between Osteoglossomorpha (bonytongues) and Elopomorpha (eels and relatives), with the two clades together forming a sister group of Clupeocephala which includes all the remaining teleosts. The arowana genome retains the full complement of eight Hox clusters unlike the African butterfly fish (Pantodon buchholzi), another bonytongue fish, which possess only five Hox clusters. Differential gene expression among three varieties provides insights into the genetic basis of colour variation. A potential heterogametic sex chromosome is identified in the female arowana karyotype, suggesting that the sex is determined by a ZW/ZZ sex chromosomal system. The high-quality reference genome of the golden arowana and the draft assemblies of the red and green varieties are valuable resources for understanding the biology, adaptation and behaviour of Asian arowanas.

Key Points DUSP22-rearranged ALCLs belong to a distinct subset of ALCLs lacking activated STAT3. DUSP22-rearranged ALCLs have a unique molecular signature characterized by DNA hypomethylation and an immunogenic phenotype.

Peripheral T-cell lymphomas (PTCLs) represent a heterogeneous group of T-cell malignancies that generally demonstrate aggressive clinical behavior, often are refractory to standard therapy, and remain significantly understudied. The most common World Health Organization subtype is PTCL, not otherwise specified (NOS), essentially a “wastebasket” category because of inadequate understanding to assign cases to a more specific diagnostic entity. Identification of novel fusion genes has contributed significantly to improving the classification, biologic understanding, and therapeutic targeting of PTCLs. Here, we integrated mate-pair DNA and RNA next-generation sequencing to identify chromosomal rearrangements encoding expressed fusion transcripts in PTCL, NOS. Two of 11 cases had novel fusions involving VAV1, encoding a truncated form of the VAV1 guanine nucleotide exchange factor important in T-cell receptor signaling. Fluorescence in situ hybridization studies identified VAV1 rearrangements in 10 of 148 PTCLs (7%). These were observed exclusively in PTCL, NOS (11%) and anaplastic large cell lymphoma (11%). In vitro, ectopic expression of a VAV1 fusion promoted cell growth and migration in a RAC1-dependent manner. This growth was inhibited by azathioprine, a clinically available RAC1 inhibitor. We also identified novel kinase gene fusions, ITK-FER and IKZF2-ERBB4, as candidate therapeutic targets that show similarities to known recurrent oncogenic ITK-SYK fusions and ERBB4 transcript variants in PTCLs, respectively. Additional novel and potentially clinically relevant fusions also were discovered. Together, these findings identify VAV1 fusions as recurrent and targetable events in PTCLs and highlight the potential for clinical sequencing to guide individualized therapy approaches for this group of aggressive malignancies.