PREPRINT: Using digital epidemiology methods to monitor influenza-like illness in the Netherlands in real-time: the 2017-2018 season

Abstract

IntroductionDespite the early development of Google Flu Trends in 2009, digital epidemiology methods have not been adopted widely, with most research focusing on the USA. In this article we demonstrate the prediction of real-time trends in influenza-like illness (ILI) in the Netherlands using search engine query data. MethodsWe used flu-related search query data from Google Trends in combination with traditional surveillance data from 40 general sentinel practices to build our predictive models. We introduced an artificial 4-week delay in the use of GP data in the models, in order to test the predictive performance of the search engine data.Simulating the weekly use of a prediction model across the 2017/2018 flu season we used lasso regression to fit 52 prediction models (one for each week) for weekly ILI incidence. We used rolling forecast cross-validation for lambda optimization in each model, minimizing the maximum absolute error. ResultsThe models accurately predicted the number of ILI cases during the 2017/18 ILI epidemic in real time with a mean absolute error of 1.40 (per 10,000 population) and a maximum absolute error of 6.36. The model would also have identified the onset, peak, and end of the epidemic with reasonable accuracyThe number of predictors that were retained in the prediction models was small, ranging from 3 to 5, with a single keyword ('Griep' = 'Flu') having by far the most weight in all models. DiscussionThis study demonstrates the feasibility of accurate real-time ILI incidence predictions in the Netherlands using internet search query data .Digital ILI monitoring strategies may be useful in countries with poor surveillance systems, or for monitoring emergent diseases, including influenza pandemics. We hope that this transparent and accessible case study inspires and supports further developments in field of digital epidemiology in Europe and beyond.

Using web search queries to monitor influenza-like illness: an exploratory retrospective analysis, Netherlands, 2017/18 influenza season

“…To further improve predictive performance, future studies should consider the following strategies that have been successfully applied in previous disease prediction models: (i) using other online data sources, e.g. Wikipedia page views, Twitter activity [20,22], (ii) conducting, more extensive data pre-processing, e.g. principal component analysis [24,25], (iii) applying alternative statistical models, e.g.…”

“…The R code for this study is provided under open, creative commons (CC) BY license and all data that were used for this study can be accessed online [20]. ILI incidence per 10,000 population ILI incidence per 10,000 population ILI incidence per 10,000 population ILI incidence per 10,000 population ILI incidence per 10,000 population ILI: influenza-like illness.…”