Population-averaged standard template brain atlas for the common marmoset (Callithrix jacchus)

Hikishima, Keigo; Quallo, M. M.; Komaki, Yuji; Yamada, Masayuki; Kawai, Kenji; Momoshima, Suketaka; Okano, Hirotaka James; Sasaki, Erika; Tamaoki, Norikazu; Lemon, R. N.; Iriki, Atsushi; Okano, Hideyuki

doi:10.1016/j.neuroimage.2010.10.061

Cited by 85 publications

(65 citation statements)

References 49 publications

Supporting

Mentioning

Contrasting

Order By: Relevance

“…The mean error of all objectively tested landmarks was 0.54 mm and the maximum error for any landmark from any individual tested was 1.45 mm (Table 1). Overall the variation between a landmark's location in Haiko89 and in the normalized individuals was consistent with similar measurements in marmosets (Hikishima et al, 2011) and noticeably smaller than those from macaques and baboons (Black et al, 2001a(Black et al, , 2001bMcLaren et al, 2009).…”

Section: Template Validationsupporting

confidence: 81%

“…Following procedures of template validation from previous studies, landmark distance measures were used to validate Haiko89 (Black et al, 2001a(Black et al, , 2001bElla and Keller, 2015;Hikishima et al, 2011;McLaren et al, 2009;Quallo et al, 2010).…”

Section: Validationmentioning

confidence: 99%

“…The first non-human primate populationaverage template was constructed from the T1w MRI images of nine olive baboons (Papio anubis, Black et al, 1997Black et al, , 2001b and was mapped to the Davis and Huffman (1968) baboon brain atlas. Since, template images for several non-human primate species have ben made available: the pig-tailed macaque (Macaca nemestrina, Black et al, 2001a), the rhesus macaque (Macaca mulatta, Frey et al, 2011;McLaren et al, 2009;Rohlfing et al, 2012), the Japanese macaque (Macaca fuscata, Quallo et al, 2010), the cynomolgus monkey (Macaca fascicularis, purl.org/net/kbmd/ cyno), the vervet monkey (Chlorocebus aethiops, Fedorov et al, 2011;Maldjian et al, 2014;Woods et al, 2011), the common marmoset (Callithrix jacchus, Hikishima et al, 2011;Newman et al, 2009) and the olive baboon (Papio anubis, Black et al, 2001b;Greer et al, 2002). Recently, tissue probability maps have also been provided with non-human primate brain templates (e.g., Fedorov et al, 2011;Hikishima et al, 2011;McLaren et al, 2009;Rohlfing et al, 2012).…”

Section: Introductionmentioning

confidence: 99%

See 2 more Smart Citations

The average baboon brain: MRI templates and tissue probability maps from 89 individuals

et al. 2016

View full text Add to dashboard Cite

The baboon (Papio) brain is a remarkable model for investigating the brain. The current work aimed at creating a population-average baboon (Papio anubis) brain template and its left/right hemisphere symmetric version from a large sample of T1-weighted magnetic resonance images collected from 89 individuals. Averaging the prior probability maps output during the segmentation of each individual also produced the first baboon brain tissue probability maps for gray matter, white matter and cerebrospinal fluid. The templates and the tissue probability maps were created using state-of-the-art, freely available software tools and are being made freely and publicly available: http://www.nitrc.org/projects/haiko89/ or http://lpc.univ-amu.fr/spip.php?article589. It is hoped that these images will aid neuroimaging research of the baboon by, for example, providing a modern, high quality normalization target and accompanying standardized coordinate system as well as probabilistic priors that can be used during tissue segmentation.

show abstract

Section: Template Validationsupporting

confidence: 81%

Section: Validationmentioning

confidence: 99%

Section: Introductionmentioning

confidence: 99%

See 1 more Smart Citation

The average baboon brain: MRI templates and tissue probability maps from 89 individuals

et al. 2016

View full text Add to dashboard Cite

show abstract

“…However, the disadvantages of using such monkeys for experimental manipulations include their large body size, inefficient fertility, and slow development to sexual maturity. Previously, the common marmoset (Callithrix jacchus), a small New World monkey species, has emerged as a promising model for scientific studies including the investigation of neurological disorders, basic and behavioral neuroscience, neuroimaging, stem cell research, drug toxicology, immunity and autoimmune diseases, and reproductive biology (Poswillo et al, 1972;Mansfield, 2003;Iwanami et al, 2005a,b;Sasaki et al, 2005;Leuner et al, 2007;Tomioka et al, 2010;Hikishima et al, 2011;Yamazaki et al, 2011). The marmoset has a number of advantageous characteristics as an experimental animal, including a small body size, high fertility, and early sexual maturity (they reach adulthood at 1.5-2 years).…”

Section: Introductionmentioning

confidence: 99%

Comparative Anatomy of Marmoset and Mouse Cortex from Genomic Expression

et al. 2012

Self Cite

View full text Add to dashboard Cite

Advances in mouse neural circuit genetics, brain atlases, and behavioral assays provide a powerful system for modeling the genetic basis of cognition and psychiatric disease. However, a critical limitation of this approach is how to achieve concordance of mouse neurobiology with the ultimate goal of understanding the human brain. Previously, the common marmoset has shown promise as a genetic model system toward the linking of mouse and human studies. However, the advent of marmoset transgenic approaches will require an understanding of developmental principles in marmoset compared to mouse. In this study, we used gene expression analysis in marmoset brain to pose a series of fundamental questions on cortical development and evolution for direct comparison to existing mouse brain atlas expression data. Most genes showed reliable conservation of expression between marmoset and mouse. However, certain markers had strikingly divergent expression patterns. The lateral geniculate nucleus and pulvinar in the thalamus showed diversification of genetic organization between marmoset and mouse, suggesting they share some similarity. In contrast, gene expression patterns in early visual cortical areas showed marmoset-specific expression. In prefrontal cortex, some markers labeled architectonic areas and layers distinct between mouse and marmoset. Core hippocampus was conserved, while afferent areas showed divergence. Together, these results indicate that existing cortical areas are genetically conserved between marmoset and mouse, while differences in areal parcellation, afferent diversification, and layer complexity are associated with specific genes. Collectively, we propose that gene expression patterns in marmoset brain reveal important clues to the principles underlying the molecular evolution of cortical and cognitive expansion.

show abstract

“…To delimitate our regions of interest, we used primate stereological atlases and multiple other sources as references [Stephan et al, 1981;Semendeferi et al, 1997Semendeferi et al, , 2001Semendeferi et al, , 2002Paxinos et al, 1999;Rilling and Insel, 1999;Semendeferi and Damasio, 2000;Semendeferi, 2001;Matochik et al, 2004;Sherwood et al, 2004;Crick and Koch, 2005;Schoenemann et al, 2005;Looi et al, 2008;Palazzi and Bordier, 2008;Tammer et al, 2009;Frey et al, 2011;Hikishima et al, 2011;Bauernfeind et al, 2013]. For the regions measured by Stephan et al [1981], we followed their notes on which component parts to include, except where we measured these component parts individually.…”

Section: Image Processing and Volume Extractionsmentioning

confidence: 99%

Primate Brain Anatomy: New Volumetric MRI Measurements for Neuroanatomical Studies

et al. 2018

View full text Add to dashboard Cite

Since the publication of the primate brain volumetric dataset of Stephan and colleagues in the early 1980s, no major new comparative datasets covering multiple brain regions and a large number of primate species have become available. However, technological and other advances in the last two decades, particularly magnetic resonance imaging (MRI) and the creation of institutions devoted to the collection and preservation of rare brain specimens, provide opportunities to rectify this situation. Here, we present a new dataset including brain region volumetric measurements of 39 species, including 20 species not previously available in the literature, with measurements of 16 brain areas. These volumes were extracted from MRI of 46 brains of 38 species from the Netherlands Institute of Neuroscience Primate Brain Bank, scanned at high resolution with a 9.4-T scanner, plus a further 7 donated MRI of 4 primate species. Partial measurements were made on an additional 8 brains of 5 species. We make the dataset and MRI scans available online in the hope that they will be of value to researchers conducting comparative studies of primate evolution.

show abstract

Population-averaged standard template brain atlas for the common marmoset (Callithrix jacchus)

Cited by 85 publications

References 49 publications

The average baboon brain: MRI templates and tissue probability maps from 89 individuals

The average baboon brain: MRI templates and tissue probability maps from 89 individuals

Comparative Anatomy of Marmoset and Mouse Cortex from Genomic Expression

Primate Brain Anatomy: New Volumetric MRI Measurements for Neuroanatomical Studies

Contact Info

Product

Resources

About