A proof-of-concept for the fabrication
of a self-polymerizing system
for sampling of gut microbiome in the upper gastrointestinal (GI)
tract is presented. An orally ingestible microdevice is loaded with
the self-polymerizing reaction mixture to entrap gut microbiota and
biomarkers. This polymerization reaction is activated in the aqueous
environment, like fluids in the intestinal lumen, and causes site-specific
microsampling in the gastrointestinal tract. The sampled microbiota
and protein biomarkers can be isolated and analyzed via high-throughput multiomic analyses. The study utilizes a hollow
microdevice (Su-8, ca. 250 μm), loaded with
an on-board reaction mixture (iron chloride, ascorbic acid, and poly(ethylene
glycol) diacrylate monomers) for diacrylate polymerization in the
gut of an animal model. An enteric-coated rat capsule was used to
orally gavage these microdevices in a rat model, thereby, protecting
the microdevices in the stomach (pH 2), but releasing them in the
intestine (pH 6.6). Upon capsule disintegration, the microdevices
were released in the presence of luminal fluids (in the small intestine
region), where iron chloride reacts with ascorbic acid, to initiate
poly(ethylene glycol) diacrylate polymerization via a free radical mechanism. Upon retrieval of the microdevices, gut
microbiota was found to be entrapped in the polymerized hydrogel matrix,
and genomic content was analyzed via 16s rRNA amplicon
sequencing. Herein, the results show that the bacterial composition
recovered from the microdevices closely resemble the bacterial composition
of the gut microenvironment to which the microdevice is exposed. Further,
histological assessment showed no signs of local tissue inflammation
or toxicity. This study lays a strong foundation for the development
of untethered, non-invasive microsampling technologies in the gut
and advances our understanding of host–gut microbiome interactions,
leading to a better understanding of their commensal behavior and
associated GI disease progression in the near future.