Non-fibre carbohydrate (NFC) rich diets are commonly fed in ruminant production systems. The objective was to determine whether NFC challenge affects proteasome activity, or messenger ribonucleic acid (mRNA) expression of proteasome subunits or apoptotic Bcl-2 proteins, in slow- or fast- twitch muscle of sheep. For 12 d prior to slaughter, lambs (n = 8) received either a control diet (28.4% of dry matter as grain), or a diet of increasing amounts of grain up to 79.1% of dry matter. A decrease in urinary pH (P = 0.01), base excess of blood and extracellular fluid (P = 0.01), bicarbonate (P = 0.03) and total carbon dioxide (P = 0.04), and an increase in anion gap (P = 0.07) in NFC lambs are indicative of metabolic acidosis. NFC lambs had significantly lower mRNA expression of the 20S -β subunit (P = 0.05), and a tendency toward lower mRNA expression of the 20S-α subunit (P = 0.11) and the 19S isoform (P = 0.15) in soleus, but not to the same extent in extensor digitorum longus (EDL) muscle. Downregulation of Bad mRNA expression occurred in both soleus (P = 0.10) and EDL (P = 0.08) muscle as a result of NFC challenge. These results indicate that NFC challenge does affect mRNA expression of genes related to the proteasome and apoptosis in a muscle specific manner. Key words: Ubiquitin-mediated proteolytic pathway, non-fibre carbohydrate, apoptosis, sheep