We have generated nine monoclonal antibodies against subunits of the maize (Zea mays 1.) mitochondrial F1-ATPase. These monoclonal antibodies were generated by immunizing mice against maize mitochondrial fractions and randomly collecting useful hybridomas. To prove that these monoclonal antibodies were directed against ATPase subunits, we tested their cross-reactivity with purified F,-ATPase from pea cotyledon mitochondria. One of the antibodies (a-ATPaseD) cross-reacted with the pea F,-ATPase asubunit and two (8-ATPaseD and 8-ATPaseE) cross-reacted with the pea Fl-ATPase j3-subunit. This established that, of the nine antibodies, four react with the maize a-ATPase subunit and the other five react with the maize 8-ATPase subunit. Most of the monoclonal antibodies cross-react with the F1-ATPase from a wide range of plant species. Each of the four monoclonal antibodies raised against the a-subunit recognizes a different epitope. Of the five 8-subunit antibodies, at least three different epitopes are recognized. Direct incubation of the monoclonal antibodies with the F1-ATPase failed to inhibit the ATPase activity. lhe monoclonal antibodies a-ATPaseD and 8-ATPaseD were bound to epoxideglass QuantAffinity beads and incubated with a purified preparation of pea Fl-ATPase. lhe ATPase activity was not inhibited when the antibodies bound the ATPase. lhe antibodies were used to help map the pea F1-ATPase subunits on a two-dimensional map of whole pea cotyledon mitochondrial protein. In addition, the antibodies have revealed antigenic similarities between various isoforms observed for the a-and 8-subunits of the purified F1-ATPase. The specificity of these monoclonal antibodies, along with their cross-species recognition and their ability to bind the F1-ATPase without inhibiting enzymic function, makes these antibodies useful and invaluable tools for the further purification and characterization of plant mitochondrial F,-ATPases.Electrogenic H+-ATPases have been found in nearly a11 physiological membrane systems investigated. Each of these membrane-bound ATPases can be placed into one of severa1 groups. The three most common types of proton ATPases are E1-E2 type, Fo-F1 type, and the microsomal type (AlAwqati, 1986). The E1-E2 type ATPases are found in yeast and funga1 plasma membranes and the gastric plasma and microsomal membranes. ATPases of the microsomal type are located in the membranes of Golgi apparatus, ER, endosomes,